Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G056600.1 | Wheat | nucleus | 97.53 | 97.45 |
| TraesCS4B01G056200.1 | Wheat | nucleus | 83.63 | 95.59 |
| HORVU4Hr1G009390.7 | Barley | nucleus | 90.12 | 91.39 |
| KXG37677 | Sorghum | nucleus | 63.55 | 63.9 |
| Zm00001d033843_P007 | Maize | nucleus | 61.16 | 62.31 |
| Zm00001d013380_P001 | Maize | nucleus | 59.77 | 60.66 |
| CDY55018 | Canola | mitochondrion | 4.63 | 54.55 |
| PGSC0003DMT400008250 | Potato | nucleus | 3.78 | 41.53 |
| GSMUA_Achr7P27630_001 | Banana | nucleus | 39.61 | 38.03 |
| CDY43886 | Canola | nucleus | 31.04 | 34.63 |
| CDX88655 | Canola | nucleus | 27.88 | 34.51 |
| Bra006786.1-P | Field mustard | nucleus | 27.88 | 34.48 |
| GSMUA_Achr4P14570_001 | Banana | nucleus | 37.3 | 34.48 |
| KRH37905 | Soybean | nucleus | 34.83 | 34.22 |
| Bra002677.1-P | Field mustard | nucleus | 30.66 | 33.87 |
| KRH12930 | Soybean | nucleus | 33.82 | 33.59 |
| VIT_11s0037g00130.t01 | Wine grape | nucleus | 37.37 | 32.84 |
| AT5G58040.1 | Thale cress | nucleus | 30.12 | 32.61 |
| CDY11833 | Canola | nucleus | 26.33 | 32.02 |
| Solyc07g005320.2.1 | Tomato | nucleus | 32.9 | 30.87 |
| CDY70580 | Canola | cytosol, nucleus, plastid | 13.28 | 29.45 |
| TraesCS4A01G122300.2 | Wheat | nucleus | 12.2 | 15.03 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G258200.3 | EnsemblPlantsGene:TraesCS4A01G258200 | InterPro:Fip1 | PANTHER:PTHR36884 | PFAM:PF05182 | SEG:seg |
| MapMan:16.2.1.2.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:570988372..570998526
Molecular Weight (calculated)
143773.0 Da
IEP (calculated)
5.126
GRAVY (calculated)
-1.375
Length
1295 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDDDEFGDL YTDIVLPTSE PPRPPPPAET PPRAAPAPNP NSAPAPASAA AAAGAEDDDD DDWLLGGGDP LAGVDPTTDW VDEDDDGGAP PAVKREVDAK
0101: PPPPAAEDPD PLMGVGADDP GAAIPGLSSS AAAGGAAGSD EWDSDSEDDL QIVLNETDGR RRLGEDEGDD EDGEDLLIVA DGPHVPGMEE QEWVEDGTAA
0201: GPEGERKEGG EPGKTGPMPG GRIGYSGGGP GFHPQHHSMF KYVRPGAPTG GAPSAPGQFR PPGPPGPFSG RGRGDWRPGA CRGMNKGFHS GYGMTPWGGA
0301: GRGFGGGLDF TLPPHKIIFD IDIDTTFEEK PWKYPSAEIS DFFNFGLDEE KWKDYCKQLD QSRLESTMQS RIRVYESGRS EQDYDPDLPP ELAAAAGHHD
0401: VSADNRNKVD NGHTDFSAQG RVPTSNRPAV MTGRPIQVET GYGERFPSAD TRPGRNRESD SVIEIVCEPP ADDPIVADSS VDQSEKDSQG GKKSNGVEES
0501: EVYTPEKTNN SSYNSSLGKA EHTRRLPVSS EGDMLTSDVQ GRSPPNYKIR GSPSRGVRLR GRSQGVNPSR EAESSNEVPR KTTSSKRRRD TPGDSKPVDD
0601: SETKDGLKRS PTVADETTDK LSTEDQFADN DDRLALVDSA EMDADDAISE PHMASDTNED DNEDHSSKRQ KIISKVEQPP GLINSSDQVD LKTLNSENSR
0701: GVRSGSSKDH QKRLESGEEV LQDRRSRRVN DVRRHHDGEE RDPRRKDVSA RDVKPEIERT HLASRGRDDI HHPYGNRDRD IRGKSFDRVR ETEILQRRED
0801: SMHNRRGKEE DLRLNYNAEV GARHRNKLRP IDRNDRDEDP HPRKLLDDGD WRGSRQRERG DMVLNSRESL DDSHIKRKKD EENTRRMKPE SEDAVHGYRG
0901: RDDPNRRKRE RDDGIDQKRR DDGVRMREKA DDRSIVKNKE DNLRQREKDD RQRPKHESTL LLQREEGRGT GRGGRVMDDK IVGGGRKKDE SRSALLSKET
1001: LERNKQNEPG RRGQGAEENS TQNKGRADVR PRDDNPNNNE RNSRQDKIKK IHDNNRVSSS SDARQASRDK PRESTRKGRG SVPNEQDLHR SSKRRREDHE
1101: SFRSGKVEAK GGREQQNGRD HATSSKTSKN PQQHDSFVKQ GEEEAMSDDE NTDDSRRGRS KLERWTSHKE IDYSTIDNET THAFPSIEAD VQPPTADASG
1201: KSDVPAIVVS SDMKNSGDNG QASEMTAEER DRHLDTVERL KRRSERFKLP MPGEKEVPQN KKVDAEVQTS QNESPAADVE VKPERPARKR RWAGS
0101: PPPPAAEDPD PLMGVGADDP GAAIPGLSSS AAAGGAAGSD EWDSDSEDDL QIVLNETDGR RRLGEDEGDD EDGEDLLIVA DGPHVPGMEE QEWVEDGTAA
0201: GPEGERKEGG EPGKTGPMPG GRIGYSGGGP GFHPQHHSMF KYVRPGAPTG GAPSAPGQFR PPGPPGPFSG RGRGDWRPGA CRGMNKGFHS GYGMTPWGGA
0301: GRGFGGGLDF TLPPHKIIFD IDIDTTFEEK PWKYPSAEIS DFFNFGLDEE KWKDYCKQLD QSRLESTMQS RIRVYESGRS EQDYDPDLPP ELAAAAGHHD
0401: VSADNRNKVD NGHTDFSAQG RVPTSNRPAV MTGRPIQVET GYGERFPSAD TRPGRNRESD SVIEIVCEPP ADDPIVADSS VDQSEKDSQG GKKSNGVEES
0501: EVYTPEKTNN SSYNSSLGKA EHTRRLPVSS EGDMLTSDVQ GRSPPNYKIR GSPSRGVRLR GRSQGVNPSR EAESSNEVPR KTTSSKRRRD TPGDSKPVDD
0601: SETKDGLKRS PTVADETTDK LSTEDQFADN DDRLALVDSA EMDADDAISE PHMASDTNED DNEDHSSKRQ KIISKVEQPP GLINSSDQVD LKTLNSENSR
0701: GVRSGSSKDH QKRLESGEEV LQDRRSRRVN DVRRHHDGEE RDPRRKDVSA RDVKPEIERT HLASRGRDDI HHPYGNRDRD IRGKSFDRVR ETEILQRRED
0801: SMHNRRGKEE DLRLNYNAEV GARHRNKLRP IDRNDRDEDP HPRKLLDDGD WRGSRQRERG DMVLNSRESL DDSHIKRKKD EENTRRMKPE SEDAVHGYRG
0901: RDDPNRRKRE RDDGIDQKRR DDGVRMREKA DDRSIVKNKE DNLRQREKDD RQRPKHESTL LLQREEGRGT GRGGRVMDDK IVGGGRKKDE SRSALLSKET
1001: LERNKQNEPG RRGQGAEENS TQNKGRADVR PRDDNPNNNE RNSRQDKIKK IHDNNRVSSS SDARQASRDK PRESTRKGRG SVPNEQDLHR SSKRRREDHE
1101: SFRSGKVEAK GGREQQNGRD HATSSKTSKN PQQHDSFVKQ GEEEAMSDDE NTDDSRRGRS KLERWTSHKE IDYSTIDNET THAFPSIEAD VQPPTADASG
1201: KSDVPAIVVS SDMKNSGDNG QASEMTAEER DRHLDTVERL KRRSERFKLP MPGEKEVPQN KKVDAEVQTS QNESPAADVE VKPERPARKR RWAGS
0001: MEEDDEFGDL YSDVLQPFQP PVVLPPPPPL PHRSIDLNLR SQDQDVSEPN SAPISRVSDN DAVKLSTQDA TRQAIVDGGG DDKDMSFDIE EPDADSTPTI
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEGE YVWDERSCVR IGREYA
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEGE YVWDERSCVR IGREYA
Arabidopsis Description
FIPS5FIP1[V]-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KDH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.