Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70580 | Canola | cytosol, nucleus, plastid | 49.49 | 99.32 |
| AT5G58040.1 | Thale cress | nucleus | 73.12 | 71.66 |
| Bra006786.1-P | Field mustard | nucleus | 63.91 | 71.54 |
| PGSC0003DMT400008250 | Potato | nucleus | 4.18 | 41.53 |
| KRH37905 | Soybean | nucleus | 40.53 | 36.04 |
| KRH12930 | Soybean | nucleus | 39.42 | 35.43 |
| VIT_11s0037g00130.t01 | Wine grape | nucleus | 43.17 | 34.33 |
| Solyc07g005320.2.1 | Tomato | nucleus | 37.71 | 32.03 |
| Zm00001d013380_P001 | Maize | nucleus | 34.04 | 31.27 |
| TraesCS4B01G056200.1 | Wheat | nucleus | 29.95 | 30.98 |
| Zm00001d033843_P007 | Maize | nucleus | 33.45 | 30.84 |
| TraesCS4A01G258200.3 | Wheat | nucleus | 33.87 | 30.66 |
| KXG37677 | Sorghum | nucleus | 33.62 | 30.59 |
| TraesCS4D01G056600.1 | Wheat | nucleus | 33.36 | 30.17 |
| HORVU4Hr1G009390.7 | Barley | nucleus | 32.59 | 29.91 |
| GSMUA_Achr7P27630_001 | Banana | nucleus | 34.22 | 29.73 |
| GSMUA_Achr4P14570_001 | Banana | nucleus | 31.4 | 26.27 |
| Bra001208.1-P | Field mustard | nucleus | 11.09 | 10.26 |
Protein Annotations
Description
AT5G58040 (E=0.0) ATFIP1[V] | ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding
Coordinates
chrA10:+:8288667..8293344
Molecular Weight (calculated)
130945.0 Da
IEP (calculated)
5.536
GRAVY (calculated)
-1.395
Length
1172 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEDDEFGDL YSDVFQPPAV LSPPPPPLRS IDLNLRSQDQ DEPEEPNPPP VSRVSDTTTA PKLPPALPHA ANRDSGGGGD DKDMTFDIEE PDADSTPAIP
0101: GLALDRGVTT TIDEAGDGGG GGYGGHGGDD WDSDGEDDLQ IVLNDNNVMM GGDNRRSRMG DNEADDDDDD EEPLVIVTDT DQNQPMEDQL WGEDGLQGVE
0201: GEGKEGGGEA LKGSGPGGAV GPPKAGYSSH GYHPFHSQFK YVRPGAAPMP GGAASAPGTS SGQVRPPANL GPMAGRGRGD WRPMGMRNPS VAQKGYHQAW
0301: GSNTAGRGLD FTLPSHKTIF EVDIETFEDK PWRYQGVDIT DYFNFGLNEE TWIDYCKQLD QRRIETTMQS RIRVYESGRT DQGYDPDLPP ELAAATGAQG
0401: VPVDSSNLVK VETAQVDSAK VPAHVRPALP PGRPIPVETG SGERQPSVDT RAPRMRDLDA IIEIVCQDSH EDAPSGENDT EPAVSSLPIE NVPVETGYVN
0501: SRRPDGESAE RSPTQDEPRK RLLRKQDDEI SRSTGSGQSF RSSSPVGDRG TMSSSVDRED MEGVAGKDAE MEEERKTSSA VQEDDGGESK TERSSGNSKA
0601: RSESHRDHQQ LKDSAEQEVI QNKHSTRPAS SKKHHDNSAP YQSRKNQDRG KEMERTRAAS KGGREYSNPH TDVDYTIARG DDYDRRKGRD VDGGFWRRKE
0701: DDPFSRRGGD EGFRKRDREE DLSSKQRGKM RESDIRNKDD HVPSRKHLDD GGLRNSYELD DHIGKRRKDE EYLRRNRSEK NEISHGQRES TSRLKRERGD
0801: RLDHQKRDVQ HKSRDDFDDH SSLRHRDDFY MQRDGNERLR EREDMDKLKL TQEDGLSARG RERQVPTTRG HRGSEDRSSM MKDDYKASEK EHLTKDSTRH
0901: SKQTKRREYH GEESSHHRGH GDFSARTDET VNNEKMPRQE KTSAKSDNVI NSMDGQQLQD RKHKDSRRKI KEQREGADSA RSKQGEENGS SEVTGSKGKN
1001: EARNHRSEIP QQTNATKRHK EDASSGDELQ DSKRGRTKME RWASHKERDD VVTVKASSTS SKLQDKEKGT NGRVLEPVHD KNRDVTEEKS SHDLAETKDR
1101: SEKGPPGDRH LDTVEKLKKR SERFKLPMPT EKDTTGVKKM ESETLPSAKI EGPVDSEVKA ERPARKRRWT SS
0101: GLALDRGVTT TIDEAGDGGG GGYGGHGGDD WDSDGEDDLQ IVLNDNNVMM GGDNRRSRMG DNEADDDDDD EEPLVIVTDT DQNQPMEDQL WGEDGLQGVE
0201: GEGKEGGGEA LKGSGPGGAV GPPKAGYSSH GYHPFHSQFK YVRPGAAPMP GGAASAPGTS SGQVRPPANL GPMAGRGRGD WRPMGMRNPS VAQKGYHQAW
0301: GSNTAGRGLD FTLPSHKTIF EVDIETFEDK PWRYQGVDIT DYFNFGLNEE TWIDYCKQLD QRRIETTMQS RIRVYESGRT DQGYDPDLPP ELAAATGAQG
0401: VPVDSSNLVK VETAQVDSAK VPAHVRPALP PGRPIPVETG SGERQPSVDT RAPRMRDLDA IIEIVCQDSH EDAPSGENDT EPAVSSLPIE NVPVETGYVN
0501: SRRPDGESAE RSPTQDEPRK RLLRKQDDEI SRSTGSGQSF RSSSPVGDRG TMSSSVDRED MEGVAGKDAE MEEERKTSSA VQEDDGGESK TERSSGNSKA
0601: RSESHRDHQQ LKDSAEQEVI QNKHSTRPAS SKKHHDNSAP YQSRKNQDRG KEMERTRAAS KGGREYSNPH TDVDYTIARG DDYDRRKGRD VDGGFWRRKE
0701: DDPFSRRGGD EGFRKRDREE DLSSKQRGKM RESDIRNKDD HVPSRKHLDD GGLRNSYELD DHIGKRRKDE EYLRRNRSEK NEISHGQRES TSRLKRERGD
0801: RLDHQKRDVQ HKSRDDFDDH SSLRHRDDFY MQRDGNERLR EREDMDKLKL TQEDGLSARG RERQVPTTRG HRGSEDRSSM MKDDYKASEK EHLTKDSTRH
0901: SKQTKRREYH GEESSHHRGH GDFSARTDET VNNEKMPRQE KTSAKSDNVI NSMDGQQLQD RKHKDSRRKI KEQREGADSA RSKQGEENGS SEVTGSKGKN
1001: EARNHRSEIP QQTNATKRHK EDASSGDELQ DSKRGRTKME RWASHKERDD VVTVKASSTS SKLQDKEKGT NGRVLEPVHD KNRDVTEEKS SHDLAETKDR
1101: SEKGPPGDRH LDTVEKLKKR SERFKLPMPT EKDTTGVKKM ESETLPSAKI EGPVDSEVKA ERPARKRRWT SS
0001: MEEDDEFGDL YSDVLQPFQP PVVLPPPPPL PHRSIDLNLR SQDQDVSEPN SAPISRVSDN DAVKLSTQDA TRQAIVDGGG DDKDMSFDIE EPDADSTPTI
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
Arabidopsis Description
FIPS5FIP1[V]-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KDH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.