Factsheet for Bra024372.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra004007.1-P
Bra004361.1-P
Bra006786.1-P
Bra024372.1-P
Bra031905.1-P
Bra038326.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65260.1	Bra004007.1-P	AT1G69120.1	11439126
AT5G65260.1	Bra004361.1-P	AT1G69120.1	11439126
AT5G65260.1	Bra038326.1-P	AT1G69120.1	11439126
AT5G65260.1	Bra002677.1-P	AT5G58040.1	18479511
AT5G65260.1	Bra006786.1-P	AT5G58040.1	18479511
AT5G65260.1	Bra024372.1-P	AT5G65260.1	18479511
AT5G65260.1	Bra031905.1-P	AT5G65260.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08805	Canola	nucleus, plasma membrane	99.55	99.55
CDY55162	Canola	nucleus	99.09	99.09
AT5G65260.1	Thale cress	nucleus	94.55	94.55
KRH59303	Soybean	nucleus	81.36	83.26
Bra031905.1-P	Field mustard	mitochondrion, nucleus, plasma membrane	38.18	82.35
KRH43152	Soybean	nucleus	80.91	81.65
GSMUA_Achr2P22250_001	Banana	nucleus	78.64	80.09
PGSC0003DMT400043273	Potato	nucleus	78.64	80.09
PGSC0003DMT400041675	Potato	nucleus	79.09	79.82
GSMUA_Achr3P21300_001	Banana	nucleus	78.18	79.63
GSMUA_Achr6P10340_001	Banana	nucleus	78.18	79.63
EER88092	Sorghum	nucleus	71.36	77.34
Zm00001d037200_P004	Maize	extracellular, nucleus	70.45	76.35
TraesCS7B01G083600.1	Wheat	nucleus	70.45	74.16
KXG30711	Sorghum	nucleus	70.0	72.64
Os06t0219600-01	Rice	nucleus	66.82	72.06
TraesCS6A01G316300.1	Wheat	nucleus	68.64	71.9
Os02t0757900-02	Rice	nucleus	69.09	70.37
GSMUA_AchrUn_...	Banana	nucleus	65.0	68.75
HORVU6Hr1G077700.12	Barley	nucleus	67.73	68.66
Bra029187.1-P	Field mustard	nucleus	67.27	65.78
Bra035725.1-P	Field mustard	nucleus	66.36	64.32
TraesCS7A01G177900.1	Wheat	nucleus	66.36	63.48
TraesCS7D01G179700.1	Wheat	nucleus	66.36	63.48
Bra022536.1-P	Field mustard	nucleus	65.0	61.9
TraesCS6D01G295600.1	Wheat	nucleus	62.27	61.71
TraesCS6B01G346800.2	Wheat	nucleus	67.73	60.57
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	27.27	58.25
Zm00001d052198_P002	Maize	nucleus	69.09	57.14
Zm00001d044869_P001	Maize	nucleus	69.55	56.04
Zm00001d018112_P004	Maize	nucleus	70.0	54.04
Bra001462.1-P	Field mustard	nucleus	27.27	9.55
Bra038740.1-P	Field mustard	nucleus	25.0	8.93

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra024372	EnsemblPlants:Bra024372.1	EnsemblPlants:Bra024372.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4E6G8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253F501	SEG:seg

Description

AT5G65260 (E=9e-097) | polyadenylate-binding protein family protein / PABP family protein

Coordinates

chrA06:-:15271838..15274101

Molecular Weight (calculated)

25208.8 Da

IEP (calculated)

4.797

GRAVY (calculated)

-0.817

Length

220 amino acids

Sequence
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDLEAPNPDM EMAAADEDAA KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPATLA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQSCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAIQEALQ LNESELHGRQ LKVLPKRTNV PGLKQHRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.