Factsheet for Bra022536.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16338	Canola	nucleus	98.7	98.7
CDX91567	Canola	nucleus	96.54	97.81
Bra029187.1-P	Field mustard	nucleus	86.15	88.44
Bra035725.1-P	Field mustard	nucleus	86.58	88.11
AT5G51120.2	Thale cress	nucleus	85.71	74.72
PGSC0003DMT400021468	Potato	cytosol, nucleus	34.2	74.53
KRG92240	Soybean	nucleus	66.67	71.96
KRH34559	Soybean	nucleus	66.67	71.96
Solyc03g094080.2.1	Tomato	nucleus	49.35	71.7
Bra024372.1-P	Field mustard	nucleus	61.9	65.0
Solyc03g094040.2.1	Tomato	mitochondrion	42.42	64.05
Bra031905.1-P	Field mustard	mitochondrion, nucleus, plasma membrane	23.81	53.92
TraesCS1D01G218400.1	Wheat	nucleus	46.32	52.2
KXG38899	Sorghum	nucleus	43.29	52.08
TraesCS1A01G216200.1	Wheat	nucleus	45.89	51.46
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	44.59	44.4
Solyc03g094060.2.1	Tomato	cytosol	41.99	32.88
Bra001462.1-P	Field mustard	nucleus	27.27	10.03
Bra038740.1-P	Field mustard	nucleus	24.68	9.25

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra022536	EnsemblPlants:Bra022536.1	EnsemblPlants:Bra022536.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4E188	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545578	SEG:seg

Description

AT5G51120 (E=6e-057) PABN1, ATPABN1 | PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding

Coordinates

chrA02:-:9179532..9181077

Molecular Weight (calculated)

26319.4 Da

IEP (calculated)

4.310

GRAVY (calculated)

-0.979

Length

231 amino acids

Sequence
(BLAST)

001: MAPQDEQEHE VYGGDIPEED EGEMETDEYQ EHAGEEEEGG AAAEDEEEEL EPGSASRDLE DMKKRLKEIE EEASALREMQ AKAENDMAAA QDPSSAISAA
101: EKEEVDLRSI YVGNVDYACT PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFVEEEA VQNSLVLNET ELHGRQIKVS AKRTNVPGMR QFRGRRPFRP
201: MRGFMPGPPF YPPYAYGRVP RFRRPMRYRP Y

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.