Factsheet for Solyc03g094080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g094040.2.1	Tomato	mitochondrion	72.33	75.16
KRH34559	Soybean	nucleus	76.1	56.54
KRG92240	Soybean	nucleus	76.1	56.54
Solyc10g047360.1.1	Tomato	nucleus	67.3	54.59
Bra029187.1-P	Field mustard	nucleus	72.33	51.11
CDY38851	Canola	nucleus	72.33	51.11
CDY32641	Canola	nucleus	72.33	51.11
CDX91567	Canola	nucleus	72.33	50.44
Bra022536.1-P	Field mustard	nucleus	71.7	49.35
CDY16338	Canola	nucleus	71.7	49.35
CDY05837	Canola	nucleus	70.44	49.34
Bra035725.1-P	Field mustard	nucleus	70.44	49.34
CDX71690	Canola	nucleus	69.18	48.46
Solyc11g009090.1.1	Tomato	nucleus	66.67	48.4
TraesCS1D01G218400.1	Wheat	nucleus	59.75	46.34
TraesCS1A01G216200.1	Wheat	nucleus	59.12	45.63
AT5G51120.2	Thale cress	nucleus	72.96	43.77
KXG38899	Sorghum	nucleus	52.83	43.75
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	56.6	38.79
Solyc03g094060.2.1	Tomato	cytosol	71.7	38.64
Solyc03g094090.2.1	Tomato	nucleus	6.29	9.52
Solyc01g086980.2.1	Tomato	nucleus	31.45	7.45

Protein Annotations

EnsemblPlants:Solyc03g094080.2.1	EnsemblPlantsGene:Solyc03g094080.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002767674	UniProt:K4BIT3	MapMan:16.2.1.1.2	:	:

Description

No Description!

Coordinates

chr3:-:55790997..55804870

Molecular Weight (calculated)

18277.0 Da

IEP (calculated)

10.908

GRAVY (calculated)

-0.662

Length

159 amino acids

Sequence
(BLAST)

001: MAAGHKWIFR LSRKKKNPTA SASQAEKEEV DARSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGYAYVEF VEVEAVQNAL LLNESELHGR
101: RLKVSAKRTN VPGMKQFRGR RFNPYAGYRP RRAFVPGAPV FPPFGRVPRF RRPIRYRPY

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.