Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029187.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY38851 | Canola | nucleus | 100.0 | 100.0 |
| CDY05837 | Canola | nucleus | 92.0 | 91.19 |
| CDX71690 | Canola | nucleus | 91.11 | 90.31 |
| CDX91567 | Canola | nucleus | 88.89 | 87.72 |
| CDY16338 | Canola | nucleus | 88.89 | 86.58 |
| AT5G51120.2 | Thale cress | nucleus | 90.67 | 76.98 |
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 34.67 | 73.58 |
| KRH34559 | Soybean | nucleus | 69.78 | 73.36 |
| KRG92240 | Soybean | nucleus | 69.78 | 73.36 |
| Solyc03g094080.2.1 | Tomato | nucleus | 51.11 | 72.33 |
| CDY37814 | Canola | nucleus | 49.33 | 71.15 |
| CDY33970 | Canola | nucleus | 63.56 | 67.77 |
| CDY55162 | Canola | nucleus | 66.22 | 67.73 |
| CDY08805 | Canola | nucleus, plasma membrane | 65.78 | 67.27 |
| Solyc03g094040.2.1 | Tomato | mitochondrion | 43.56 | 64.05 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 25.33 | 55.88 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 51.56 | 54.72 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 46.67 | 51.22 |
| TraesCS1A01G216200.1 | Wheat | nucleus | 46.22 | 50.49 |
| KXG38899 | Sorghum | nucleus | 42.67 | 50.0 |
| HORVU1Hr1G055400.2 | Barley | cytosol, golgi, nucleus | 44.0 | 42.67 |
| Solyc03g094060.2.1 | Tomato | cytosol | 43.11 | 32.88 |
| CDX73810 | Canola | nucleus | 26.67 | 9.87 |
| CDY00789 | Canola | nucleus | 25.33 | 9.5 |
| CDY52667 | Canola | nucleus | 24.89 | 9.33 |
| CDY50537 | Canola | nucleus | 24.89 | 9.21 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | GO:A0A078HML1 | UniProt:A0A078HML1 | EnsemblPlants:CDY32641 | ProteinID:CDY32641 |
| ProteinID:CDY32641.1 | ProteinID:CDY38851.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00052676001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000254015F | SEG:seg | : | : | : |
Description
BnaC03g16090DBnaA03g13280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HML1]
Coordinates
chrLK032297:-:387350..388962
Molecular Weight (calculated)
25513.7 Da
IEP (calculated)
4.464
GRAVY (calculated)
-0.933
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLNDEQEHE VYGGEIPEEE GEMETDEYEE HGGEEGGAAG DEELEPGSSA KDLEDMKKRI KEIEEEAGAL REMQAKAEKE MGADQDPSGA ISSAEKEEVD
101: SRSIYVGNVD YACTPEEVQQ HFQSCGTVNR VTILTDKFGQ PKGFAYVEFV EEDAVQNSLI LNESELHGRQ IKVSAKRTNV PGMRQFRGRR PFRPMRGFMP
201: GIPFYAPYAY GRVPRFRRPM RYRPY
101: SRSIYVGNVD YACTPEEVQQ HFQSCGTVNR VTILTDKFGQ PKGFAYVEFV EEDAVQNSLI LNESELHGRQ IKVSAKRTNV PGMRQFRGRR PFRPMRGFMP
201: GIPFYAPYAY GRVPRFRRPM RYRPY
001: MLHGGGVSAA EKEEVDSRSI YVGNVDYACT PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFVEVEA VQNSLILNES ELHGRQIKVS AKRTNVPGMR
101: QFRGRGRPFR PMRGFMPGVP FYPPYAYGRV PRFRRPMRYR PY
101: QFRGRGRPFR PMRGFMPGVP FYPPYAYGRV PRFRRPMRYR PY
Arabidopsis Description
PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.