Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52667 | Canola | nucleus | 94.24 | 95.5 |
| Bra038740.1-P | Field mustard | nucleus | 95.56 | 94.32 |
| CDX73810 | Canola | nucleus | 79.44 | 79.44 |
| CDY00789 | Canola | nucleus | 77.8 | 78.83 |
| AT3G12640.3 | Thale cress | nucleus | 75.99 | 69.79 |
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 9.05 | 62.5 |
| KRH66489 | Soybean | mitochondrion | 12.17 | 48.37 |
| Solyc01g086980.2.1 | Tomato | nucleus | 42.11 | 38.15 |
| KRH43491 | Soybean | nucleus | 42.27 | 37.74 |
| KRH13922 | Soybean | nucleus | 41.12 | 37.09 |
| Os04t0472400-00 | Rice | mitochondrion | 5.26 | 33.68 |
| HORVU2Hr1G081930.1 | Barley | nucleus | 37.5 | 32.95 |
| TraesCS2A01G330100.3 | Wheat | nucleus | 36.68 | 32.46 |
| TraesCS2B01G352200.2 | Wheat | nucleus | 36.51 | 32.41 |
| TraesCS2D01G332600.2 | Wheat | nucleus | 36.84 | 32.37 |
| KXG26527 | Sorghum | nucleus | 37.01 | 31.65 |
| Zm00001d025673_P005 | Maize | nucleus | 35.69 | 30.74 |
| Os08t0504600-01 | Rice | nucleus | 33.88 | 30.12 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 34.87 | 29.82 |
| Zm00001d031422_P006 | Maize | nucleus | 32.73 | 28.67 |
| EES15409 | Sorghum | nucleus | 32.4 | 28.39 |
| Zm00001d052888_P004 | Maize | nucleus | 32.24 | 28.2 |
| TraesCS7A01G245200.1 | Wheat | nucleus | 31.74 | 27.73 |
| TraesCS7D01G243800.1 | Wheat | nucleus | 31.58 | 27.59 |
| HORVU7Hr1G050300.3 | Barley | nucleus | 31.41 | 27.52 |
| TraesCS7B01G146300.1 | Wheat | nucleus | 31.41 | 27.44 |
| Zm00001d003329_P003 | Maize | nucleus | 35.2 | 26.23 |
| CDY37814 | Canola | nucleus | 6.58 | 25.64 |
| CDY33970 | Canola | nucleus | 8.88 | 25.59 |
| CDY05837 | Canola | nucleus | 9.54 | 25.55 |
| CDX71690 | Canola | nucleus | 9.54 | 25.55 |
| CDY08805 | Canola | nucleus, plasma membrane | 9.21 | 25.45 |
| CDY16338 | Canola | nucleus | 9.54 | 25.11 |
| CDX91567 | Canola | nucleus | 9.38 | 25.0 |
| CDY55162 | Canola | nucleus | 9.05 | 25.0 |
| CDY32641 | Canola | nucleus | 9.21 | 24.89 |
| CDY38851 | Canola | nucleus | 9.21 | 24.89 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 8.06 | 23.11 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 3.78 | 22.55 |
Protein Annotations
| Gene3D:1.20.1390.10 | Gene3D:3.30.70.330 | MapMan:35.2 | GO:A0A078IKX1 | UniProt:A0A078IKX1 | EnsemblPlants:CDY50537 |
| ProteinID:CDY50537 | ProteinID:CDY50537.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00096962001 |
| InterPro:IPR000504 | InterPro:IPR002483 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF01480 |
| PFscan:PS50102 | PANTHER:PTHR45275 | InterPro:PWI_dom | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EE29A3 | SEG:seg | : | : | : |
Description
BnaA01g30430DBnaA01g30430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKX1]
Coordinates
chrLK032921:+:61956..65240
Molecular Weight (calculated)
66705.7 Da
IEP (calculated)
10.077
GRAVY (calculated)
-0.766
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSDGDDRT FNGDFSEEGV VKLKERVKVK LKEYMGDYTD DILVEYVIVL LKNGRRREEA KNELKIFLAD DSDSFVAWLW DHLAESMDEY FTSSQVEKTT
101: VRSSLVSSLN EDKALVQMDS ESEKGRAPSR RSRQWRTQPN ASDVPPLLSS ETHSHRKRSK TDSSRNEQRE AKPVVSSRLL QFAMRDALGT SKPTEPSLKR
201: LRSVVSASTQ DSSEPDPPRK TRSVAKAVNP MATVVKAVAE AAEGAKNPKA GRSVFDRISH SAGFPETSNQ RMVLGEVPPK NEERSEDQEP VQHQYSQRLD
301: NNGVYVDNMT TFDTGLQPSR LGSSVNGSYS SSSLGNRINN PKSLQHRLVD DPNRVKGTNY QNHFTEVATK QKNGGFSGNA DTGKTVKLEE QMKVPGVGLQ
401: RYTSSEAITE SSTVKPAAIA KEDSLIKKPV PGTLSTSRPL EDAKSRTIFV ANVHFGATKD SLSRHFNKFG EVLKAVIVTD SATGQPSGSA YIEFTRKESA
501: ESALSLDGTS FMSRILKIVK GSNEQQQEAA SSMSWSRAGR YARASSPYRR GIPGGAFRGR SVVRGGARSM QWKRDSAETG TNSVAAAPST RSMTYVRTDS
601: QSNGNATA
101: VRSSLVSSLN EDKALVQMDS ESEKGRAPSR RSRQWRTQPN ASDVPPLLSS ETHSHRKRSK TDSSRNEQRE AKPVVSSRLL QFAMRDALGT SKPTEPSLKR
201: LRSVVSASTQ DSSEPDPPRK TRSVAKAVNP MATVVKAVAE AAEGAKNPKA GRSVFDRISH SAGFPETSNQ RMVLGEVPPK NEERSEDQEP VQHQYSQRLD
301: NNGVYVDNMT TFDTGLQPSR LGSSVNGSYS SSSLGNRINN PKSLQHRLVD DPNRVKGTNY QNHFTEVATK QKNGGFSGNA DTGKTVKLEE QMKVPGVGLQ
401: RYTSSEAITE SSTVKPAAIA KEDSLIKKPV PGTLSTSRPL EDAKSRTIFV ANVHFGATKD SLSRHFNKFG EVLKAVIVTD SATGQPSGSA YIEFTRKESA
501: ESALSLDGTS FMSRILKIVK GSNEQQQEAA SSMSWSRAGR YARASSPYRR GIPGGAFRGR SVVRGGARSM QWKRDSAETG TNSVAAAPST RSMTYVRTDS
601: QSNGNATA
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND
Arabidopsis Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.