CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025673_P005	Maize	nucleus	86.22	86.83
Zm00001d003329_P003	Maize	nucleus	86.5	75.37
TraesCS2A01G330100.3	Wheat	nucleus	63.85	66.08
TraesCS2B01G352200.2	Wheat	nucleus	63.57	65.99
TraesCS2D01G332600.2	Wheat	nucleus	63.29	65.03
HORVU2Hr1G081930.1	Barley	nucleus	62.73	64.45
Os04t0472400-00	Rice	mitochondrion	8.16	61.05
VIT_06s0009g02150.t01	Wine grape	cytosol	6.47	52.27
VIT_10s0042g00630.t01	Wine grape	cytosol	2.95	46.67
VIT_05s0029g00530.t01	Wine grape	plastid	2.95	46.67
KRH66489	Soybean	mitochondrion	9.99	46.41
VIT_13s0064g01190.t01	Wine grape	nucleus	41.49	42.14
GSMUA_Achr9P16060_001	Banana	golgi	38.54	38.54
Solyc01g086980.2.1	Tomato	nucleus	35.72	37.85
CDY52667	Canola	nucleus	31.93	37.83
KRH43491	Soybean	nucleus	35.87	37.44
CDY50537	Canola	nucleus	31.65	37.01
KRH13922	Soybean	nucleus	34.88	36.8
Bra038740.1-P	Field mustard	nucleus	31.5	36.36
CDY00789	Canola	nucleus	30.66	36.33
CDX73810	Canola	nucleus	30.38	35.53
Bra001462.1-P	Field mustard	nucleus	31.36	35.51
AT3G12640.3	Thale cress	nucleus	33.05	35.5
EES15409	Sorghum	nucleus	34.32	35.16
EER88092	Sorghum	nucleus	8.44	29.56
KXG30711	Sorghum	nucleus	8.58	28.77
KXG38899	Sorghum	nucleus	6.61	24.48

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:8058695	UniProt:A0A1B6PLI3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	EnsemblPlants:KXG26527	ProteinID:KXG26527
ProteinID:KXG26527.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275
InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3006G116100	SUPFAM:SSF54928
unigene:Sbi.20170	UniParc:UPI00081AE289	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:48391459..48399588

Molecular Weight (calculated)

77695.8 Da

IEP (calculated)

10.291

GRAVY (calculated)

-0.696

Length

711 amino acids

Sequence
(BLAST)

001: MDGGEDRTFK ANFTGEGVTM LQDRVKEKLR ELMGDYSDDT LAEYVVVLLR NGRRKDEAAK ELQVFLGDDN DAFVSWLWDH LSTNLHLYVQ PKAASSKDDA
101: RSTRSAARGL PVHSVTSSIH VNHEPEAETQ KTEITHQKRD WGNQKRDWAT IGQGQSEAVP LRSVVANVSH AEEKDFHESH ADQRAFHKSH SVRRARSPDM
201: HNHRKRSRDA DVRSTKRASQ PVVGAPRRLL QFAVRDAVKT VQPVTSSSEP ASKRLRSVVS TLASDSTLDI THIRLQKKTH SDLKIPGATA ALRAAAEAAE
301: DALKDSFSGS VFSRLGRMPT RNPTEQSPAH REQDLEGKEY ENIDNIQTEN QVELYERNQH GGSDVYMRDR RTEEATGSIP NIDEYGHNSA VRCNGLGSRR
401: SALPASGGNE SLVLGYVRGA SGVRSRRLIA QGPHAGSGRR PSEKILNVSG NTNAQKLPSH VTRDAIAFDP QVPMEKVANA SKSHVKIVHA NDMSMVTDKS
501: KDLRQPSSML EAQKASSGAA GSNTTAQPEG GPDSRTVFVC NVHFGASKDA LSRHFNKFGA VLKTHIVTDG VTGQSTGSAY IEFLHKESAE QALTLNGTSF
601: MSRILKVVRK SSTEATQLPG LARPSWGSPF ASRLIRTAYP RPTFPGAIRG RLPLRGVARS LQWKRGAADS ADAGKPSQTA PAAPANQSVT PTIRSFTYTR
701: TEPKPNDGAM A

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.