Factsheet for Solyc01g086980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02150.t01	Wine grape	cytosol	8.64	65.91
KRH66489	Soybean	mitochondrion	13.11	57.52
KRH43491	Soybean	nucleus	48.73	48.02
KRH13922	Soybean	nucleus	46.94	46.74
CDY52667	Canola	nucleus	38.6	43.17
CDY50537	Canola	nucleus	38.15	42.11
CDY00789	Canola	nucleus	36.96	41.33
Bra001462.1-P	Field mustard	nucleus	38.6	41.24
AT3G12640.3	Thale cress	nucleus	40.69	41.24
CDX73810	Canola	nucleus	36.96	40.79
Bra038740.1-P	Field mustard	nucleus	37.41	40.75
GSMUA_Achr9P16060_001	Banana	golgi	42.62	40.23
Os04t0472400-00	Rice	mitochondrion	5.51	38.95
TraesCS2A01G330100.3	Wheat	nucleus	38.9	37.99
TraesCS2B01G352200.2	Wheat	nucleus	38.6	37.81
TraesCS2D01G332600.2	Wheat	nucleus	38.9	37.72
HORVU2Hr1G081930.1	Barley	nucleus	38.6	37.43
Os08t0504600-01	Rice	nucleus	36.81	36.11
KXG26527	Sorghum	nucleus	37.85	35.72
EES15409	Sorghum	nucleus	36.36	35.16
Zm00001d025673_P005	Maize	nucleus	36.81	34.99
Zm00001d031422_P006	Maize	nucleus	35.92	34.73
Zm00001d052888_P004	Maize	nucleus	35.62	34.39
TraesCS7A01G245200.1	Wheat	nucleus	35.47	34.2
HORVU7Hr1G050300.3	Barley	nucleus	35.32	34.15
TraesCS7B01G146300.1	Wheat	nucleus	35.32	34.05
TraesCS7D01G243800.1	Wheat	nucleus	34.87	33.62
Solyc03g094080.2.1	Tomato	nucleus	7.45	31.45
Solyc03g094040.2.1	Tomato	mitochondrion	7.15	31.37
Zm00001d003329_P003	Maize	nucleus	36.51	30.02
Solyc10g047360.1.1	Tomato	nucleus	8.49	29.08
Solyc11g009090.1.1	Tomato	nucleus	9.39	28.77
Solyc03g094090.2.1	Tomato	nucleus	2.98	19.05
Solyc03g094060.2.1	Tomato	cytosol	7.9	17.97

Protein Annotations

Gene3D:1.20.1390.10	Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	UniProt:K4AY91	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc01g086980.2	EnsemblPlants:Solyc01g086980.2.1	UniParc:UPI0002762F87	SEG:seg

Description

No Description!

Coordinates

chr1:+:81896171..81907068

Molecular Weight (calculated)

73965.4 Da

IEP (calculated)

10.100

GRAVY (calculated)

-0.711

Length

671 amino acids

Sequence
(BLAST)

001: MGSGDREDDR TFRVNFTAEG FAKLRERVNE KLKEFMGDYT DDTLVEYVIV LLKNGRRKEE ARNELNVFLG EDSVSFVDWL WDHLGSNIDL YVQRKDYDTG
101: GTKTKPAIAE QPAKNDMHHQ DTVADKEKLN KSKSRTRREW KGLVSDGHPS LRSSLAENIP EEEAHRKVGH AKRSLSPQPE HVRKRSRPEE KPKKRESSSQ
201: TTVAATRRLL QFAVRDAVAT NRTSSSTLAP SPSLKRLRSV VSTSVEDSSL PERPQRIRSV ARAPTALATA IRAVAEAAKD VTKVRSSAVA EDVQDQSFAD
301: ASEAYSTYLH RSDYSGKHIG KSMLHDDAVV VYDSASDDEA NRGSSAVNRR AFDASRSGAP VKNIGENLLI VEHGIAYNVD DILDKSQKDQ AQPTFAPGAP
401: HQPMNIPLSV NTWKSPQYQD ARQSFEIENR RSAQSSEGLA EKSDIMLTKE STNPIAVTNG IVKPYVETQK ESQKTGFLNH GLYSTGAPTE DADSRTIFVN
501: NVHFAATKDS LSRHFNKFGE VLKVVILTDA GTGQPKGSAY VEFMRKGSAE NALSLDGTSF MSRILKVVRK SSATPEAASG TVWPRVARGG PFAVSRFGRV
601: PFPRGSPTLY RSRLPIRPGA RSMQWKRDAQ PTSTDNSGLA TPSSKAVPSP IPRSMTYVRT ESKTNGNSTA A

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.