Factsheet for Os08t0504600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G050300.3	Barley	nucleus	73.1	72.05
TraesCS7B01G146300.1	Wheat	nucleus	73.25	71.98
TraesCS7A01G245200.1	Wheat	nucleus	73.25	71.98
TraesCS7D01G243800.1	Wheat	nucleus	72.37	71.12
EES15409	Sorghum	nucleus	67.54	66.57
Zm00001d031422_P006	Maize	nucleus	65.35	64.41
Zm00001d052888_P004	Maize	nucleus	64.04	63.02
VIT_06s0009g02150.t01	Wine grape	cytosol	7.75	60.23
VIT_10s0042g00630.t01	Wine grape	cytosol	3.51	53.33
VIT_05s0029g00530.t01	Wine grape	plastid	3.51	53.33
KRH66489	Soybean	mitochondrion	10.53	47.06
VIT_13s0064g01190.t01	Wine grape	nucleus	40.64	39.71
KRH43491	Soybean	nucleus	36.7	36.86
Solyc01g086980.2.1	Tomato	nucleus	36.11	36.81
GSMUA_Achr9P16060_001	Banana	golgi	38.16	36.71
KRH13922	Soybean	nucleus	35.96	36.5
CDY52667	Canola	nucleus	29.82	34.0
Bra038740.1-P	Field mustard	nucleus	30.56	33.93
CDY50537	Canola	nucleus	30.12	33.88
CDY00789	Canola	nucleus	28.8	32.83
Bra001462.1-P	Field mustard	nucleus	29.53	32.17
CDX73810	Canola	nucleus	28.51	32.07
AT3G12640.3	Thale cress	nucleus	30.85	31.87
Os04t0472400-00	Rice	mitochondrion	4.09	29.47
Os02t0757900-02	Rice	nucleus	8.92	28.24
Os06t0219600-01	Rice	nucleus	7.89	26.47
Os04t0306800-01	Rice	nucleus	20.03	21.11

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:4345972	ProteinID:BAD08825.1	ProteinID:BAF24094.1	ProteinID:BAT06146.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0008143
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0043488	GO:GO:1900364
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0504600	EnsemblPlants:Os08t0504600-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45275	UniProt:Q6ZK85	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000023AC1F	RefSeq:XP_015650396.1	SEG:seg	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os08t0504600-01);Similar to RNA recognition motif family protein. (Os08t0504600-02)

Coordinates

chr8:+:24938716..24946837

Molecular Weight (calculated)

75303.4 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.730

Length

684 amino acids

Sequence
(BLAST)

001: MEAEDAAGGG GDGGRYFKAD LTGAGVVQLS ERVREKLREF VDDYTNNTLV EYVILLLEGG KRKDEAIKEL DVFLGKDSRA FISWLWDHLS VNLHLYVQTQ
101: EQLQVDNKDD EAPNELPGEQ KSSELQLRSK DQTHPECVSE PSTTRSRTKR DWKGIGREGN ENFPLRSVLK DILHGEEKRS QKVNEIRHPP SSNQRNGRKR
201: DRDDEPQQIK RDLPLRRDVG ASCRLLKFAV RDAVKAVQQT SSSTEPSSKR LRSVVSTSSA DSLHGKRIET STEGHLYDKK PERTRQILQV PGAALALRAA
301: AEAAADSTKV RSTGSVFSRL GQGNAVNQTP RSREQQRDYE DFKPATTADD HDSDRYDNDD EISGDITLED GEAEMNVDST SDDDVSRDDG ITRYGSSDSQ
401: VAAYPSVVEK KDVFVKCSVE PETSTMRHSN LIKEEQPGSL SVISMSKTVV VPVNANNLEP SNYETPKDVH VVEKTDITPM NATVTSLTSN IKELAHGEVQ
501: KDSQRSAIAS SVTSSYSTAH PTEDADSRTL YVSNVHFGAT KDALSRHFNK FGAVLKVVIV TNAATGQPTG SAYVEFLHKE SAERALSLNG TSFMARILKV
601: VRRSSHEAAH FYGWPGGGRT SMYARHGRMA YPRGGLPGST FRGRAPMIAG ARSLQWKREP SVTDSNTGAT VALPSAEQVL PPAT

Best Arabidopsis Sequence Match ( AT3G12640.1 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.