Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G271900.2 | Wheat | nucleus | 68.88 | 69.41 |
| TraesCS2A01G272600.1 | Wheat | nucleus | 68.57 | 68.89 |
| TraesCS2B01G290800.2 | Wheat | nucleus | 68.26 | 68.79 |
| HORVU2Hr1G066510.2 | Barley | mitochondrion | 69.34 | 65.79 |
| VIT_04s0008g03030.t01 | Wine grape | cytosol, mitochondrion, nucleus | 11.86 | 40.96 |
| Os06t0219600-01 | Rice | nucleus | 7.86 | 25.0 |
| Os02t0757900-02 | Rice | nucleus | 8.17 | 24.54 |
| Os08t0504600-01 | Rice | nucleus | 21.11 | 20.03 |
| Os04t0472400-00 | Rice | mitochondrion | 1.54 | 10.53 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4335431 | EMBL:AK067583 | ProteinID:BAF14334.1 | ProteinID:BAS88491.1 |
| ProteinID:CAD40523.2 | ProteinID:EEE60715.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os04g0306800 | EnsemblPlants:Os04t0306800-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45275 | UniProt:Q7XVN8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000021C93F | RefSeq:XP_015636510.1 | SEG:seg | : | : |
Description
RNA recognition motif, RNP-1 domain containing protein. (Os04t0306800-01);Similar to OSIGBa0096F13.9 protein. (Os04t0306800-02)
Coordinates
chr4:-:13821696..13830207
Molecular Weight (calculated)
72030.1 Da
IEP (calculated)
9.332
GRAVY (calculated)
-0.585
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MGREAAAEAE EQLLRRSLRL FAAGERSFRM DRLSPDADAL RAAVADVLPR FLGSYTDDIL AEYIVILVCN GKHQYQARDD LEAFLGDDSA KFVSWLWGYL
101: SKKALTLADN SSIQHGLTNE IRNRSTKKNL QVANALSEDT FIVNSDISSP QEHHTLQKHD STEGQNVARR HISSTVTVTP EKLVDDQCYW EGQHQKKDQR
201: SSSGRNFSTL KSGVAVRTAQ ALPQDELRHE VCIGRNASAR RFPLAVRSDD VLDPESIKKR GNVWDRLGKP AIKDRICATE DDDMHVQNGL HKKAKLMVTE
301: HELRCRMNSS TEGDLFDIAN SRRFPRSYQD VNTVQAHEHT EKSNRSRLIG RINFGDIERN QLQVRDVIRQ KSSPNLPARS VPLQSQNEFI SEVKSSVTAV
401: SESACHVSKS TKGQVPGSSK LGQLATRRNL ETEVLQSQQV SSPAQSKTGS SVHEDGGNCC NKPMKNEMLD VKLKLKQVEL DVLKLRSKQA QINNVKQGFL
501: SSGPHANLDE DADSRTVLVT NVHFAATKEA LSGHFMKCGT VLKINILTDA ISGHPKGAAF VTFTDKESVE KAVSLSGSSF FSRVLTVMRK AEAPPGFLAS
601: VQPIGRPLQS WNSPPIQKGV SPRQIPGYHL QWKREQSVLE KSPASCPTN
101: SKKALTLADN SSIQHGLTNE IRNRSTKKNL QVANALSEDT FIVNSDISSP QEHHTLQKHD STEGQNVARR HISSTVTVTP EKLVDDQCYW EGQHQKKDQR
201: SSSGRNFSTL KSGVAVRTAQ ALPQDELRHE VCIGRNASAR RFPLAVRSDD VLDPESIKKR GNVWDRLGKP AIKDRICATE DDDMHVQNGL HKKAKLMVTE
301: HELRCRMNSS TEGDLFDIAN SRRFPRSYQD VNTVQAHEHT EKSNRSRLIG RINFGDIERN QLQVRDVIRQ KSSPNLPARS VPLQSQNEFI SEVKSSVTAV
401: SESACHVSKS TKGQVPGSSK LGQLATRRNL ETEVLQSQQV SSPAQSKTGS SVHEDGGNCC NKPMKNEMLD VKLKLKQVEL DVLKLRSKQA QINNVKQGFL
501: SSGPHANLDE DADSRTVLVT NVHFAATKEA LSGHFMKCGT VLKINILTDA ISGHPKGAAF VTFTDKESVE KAVSLSGSSF FSRVLTVMRK AEAPPGFLAS
601: VQPIGRPLQS WNSPPIQKGV SPRQIPGYHL QWKREQSVLE KSPASCPTN
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND
Arabidopsis Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.