Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G271900.2 | Wheat | nucleus | 97.21 | 97.52 |
| TraesCS2B01G290800.2 | Wheat | nucleus | 96.9 | 97.2 |
| HORVU2Hr1G066510.2 | Barley | mitochondrion | 95.82 | 90.5 |
| Os04t0306800-01 | Rice | nucleus | 68.89 | 68.57 |
| VIT_04s0008g03030.t01 | Wine grape | cytosol, mitochondrion, nucleus | 11.15 | 38.3 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 8.05 | 24.76 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 7.74 | 21.74 |
| TraesCS1A01G216200.1 | Wheat | nucleus | 6.66 | 20.87 |
| TraesCS2A01G330100.3 | Wheat | nucleus | 20.59 | 19.36 |
| TraesCS7A01G245200.1 | Wheat | nucleus | 20.28 | 18.82 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G272600.1 | EnsemblPlantsGene:TraesCS2A01G272600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45275 |
| PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2A:-:446063018..446073298
Molecular Weight (calculated)
71301.7 Da
IEP (calculated)
9.225
GRAVY (calculated)
-0.733
Length
646 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQEAEADAD EQLQRRLRRV FAAEERSFRM DRRSPAAADL RSAVADVLPR FLGNYSDETL AEYIVILVCN GKHQYQARDD LEAFLGDDSA KFVAWLWGYL
101: SKTAVALAND SSVQHRLENE SQDRNDKKNL LVSKTQPGEA HIANSNILVP QEHNGLHKLD LSKGQNVAQR RISSTVTISP KMVAGDECYR EGQHQKKDWS
201: LTGGRSSSMR QSGVAAKTEH TLMQEEPHDE HLGGNSSTRR LPVAMGTDDG EVPESMRRPR NVWDRLGKPA MEDQGLATEA DNMHVENLMH KKAKLMVSEH
301: ERRCRVNSST EGDLFDRANS GNFSSSYPDV NTAHAHEPGE KSNRSRLTGR LNFGDVERNR HQVRDVISRK STSTPPVKSF VSQSLNEFTS KVKSSPASVS
401: EPARHANSLK GHVSASDKLS QLNMRLNSGT DVLQSQQISS PAQSKSGSSV REDGGNYSNK PVKDEMLDVK LKLKQVELDM LKLRSKQAQI NNGKQGALPS
501: GPHSNLEEDA DARTVLVTNV HFAATKEALS THFMKCGTVL KLNMLTDAIT GHPKGAAFVT FADKESIGRA LSLSGTSFYS RVLTVMRKAE APPGFLASIQ
601: QIGRPLPWNS PPFQKGVSPK QSSGHHLQWK REQSAMENSP ANCPTD
101: SKTAVALAND SSVQHRLENE SQDRNDKKNL LVSKTQPGEA HIANSNILVP QEHNGLHKLD LSKGQNVAQR RISSTVTISP KMVAGDECYR EGQHQKKDWS
201: LTGGRSSSMR QSGVAAKTEH TLMQEEPHDE HLGGNSSTRR LPVAMGTDDG EVPESMRRPR NVWDRLGKPA MEDQGLATEA DNMHVENLMH KKAKLMVSEH
301: ERRCRVNSST EGDLFDRANS GNFSSSYPDV NTAHAHEPGE KSNRSRLTGR LNFGDVERNR HQVRDVISRK STSTPPVKSF VSQSLNEFTS KVKSSPASVS
401: EPARHANSLK GHVSASDKLS QLNMRLNSGT DVLQSQQISS PAQSKSGSSV REDGGNYSNK PVKDEMLDVK LKLKQVELDM LKLRSKQAQI NNGKQGALPS
501: GPHSNLEEDA DARTVLVTNV HFAATKEALS THFMKCGTVL KLNMLTDAIT GHPKGAAFVT FADKESIGRA LSLSGTSFYS RVLTVMRKAE APPGFLASIQ
601: QIGRPLPWNS PPFQKGVSPK QSSGHHLQWK REQSAMENSP ANCPTD
001: MNEQLISVTA PIDDIEAPVS PKVEKMKMSR QELIDSPCTR ARRRKKENWN SSGYSRKVLR SVIVSATQQP CDRNPAKYEK SMNERSRTLK KRPYSPEREL
101: DSRFAPSGRA VSARYHDASL HQETEPHVSV WDRLGRASSE CVLDTESRTL SKFGIQTRET KVHQQHGPVF PAAYSEQHSE IFQREVLAVG YRHRVPQFDK
201: DRKPKSETIT STEPHIAYNL SRKRRYGMVS PNSGEFSYVP QYKQAEQDFE KPSLLSHQST KQDIFSEIKN VKEKMQELEL RIIQSKQLKK QKVEERKPSP
301: QSGESQYQED VSESRVIHVT NVYYAAKKEA ISMFFSSKCG AVQNVIVVTD PVTRHPKGTA FVTFATKESV GKAVALSGTM FYSRPIKVRM HVIASGVVSA
401: APQIVTGS
101: DSRFAPSGRA VSARYHDASL HQETEPHVSV WDRLGRASSE CVLDTESRTL SKFGIQTRET KVHQQHGPVF PAAYSEQHSE IFQREVLAVG YRHRVPQFDK
201: DRKPKSETIT STEPHIAYNL SRKRRYGMVS PNSGEFSYVP QYKQAEQDFE KPSLLSHQST KQDIFSEIKN VKEKMQELEL RIIQSKQLKK QKVEERKPSP
301: QSGESQYQED VSESRVIHVT NVYYAAKKEA ISMFFSSKCG AVQNVIVVTD PVTRHPKGTA FVTFATKESV GKAVALSGTM FYSRPIKVRM HVIASGVVSA
401: APQIVTGS
Arabidopsis Description
At2g24350 [Source:UniProtKB/TrEMBL;Acc:Q0WPW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.