Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G271900.2 | Wheat | nucleus | 97.83 | 97.83 |
| TraesCS2A01G272600.1 | Wheat | nucleus | 97.2 | 96.9 |
| HORVU2Hr1G066510.2 | Barley | mitochondrion | 96.43 | 90.79 |
| Os04t0306800-01 | Rice | nucleus | 68.79 | 68.26 |
| VIT_04s0008g03030.t01 | Wine grape | cytosol, mitochondrion, nucleus | 11.18 | 38.3 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 8.07 | 24.88 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 8.7 | 22.76 |
| TraesCS2B01G352200.2 | Wheat | nucleus | 20.19 | 18.98 |
| TraesCS7B01G146300.1 | Wheat | nucleus | 20.34 | 18.82 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G290800.2 | EnsemblPlantsGene:TraesCS2B01G290800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45275 |
| PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:-:403693503..403703507
Molecular Weight (calculated)
71088.5 Da
IEP (calculated)
9.078
GRAVY (calculated)
-0.700
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQEADADEQ LQRRLRRVFA AEERSFRMDR RSPAAADLRS AVADVLPRFL GNYSDETLAE YIVILVCNGK HQYQARDDLE AFLGDDSAKF VAWLWGYLCK
101: TAVALADDSS VQHRLENESQ DRNDKKNLLV TKTQPGEAHI VNSNILVPQE HNGLHKLDLT KGQNVAQRRI SSTVIISPKM VAGDECYREG QHQKKDWSST
201: GGRSSSMRQF GVAAKTEHTL MQEESHDEHL GGNSSTRRLP VAVGIADGEV PESMRRPRNV WDRLGKPAME DQGLATEADN MHVENIMHKK AKLMVSEHER
301: RCRVNSSTEG DLFDRANSGN FSSSYPDVNT AHAYEPGEKS NRSRLTGRLN FGDVERNRHQ VRDVITQKST STPPVKSFGS QSLNEFTSKV KSSPASASEP
401: ARHANSLKGH VSASDKLSQL NMRLNSGTDV LQSQQISSPA QSKSGSSVRE DGGNYSNKPV KDEMLDVKLK LKQVELDMLK LRSKQAQINN GKQGALPSGP
501: HSNLEEDADA RTVLVTNVHF AATKEALSTH FMKCGTVLKL NMLTDAITGH PKGAAFVTFA DKESIGRALS LSGTSFYSRV LTVMRKAEAP PGFLASIQQI
601: GRPLPWNSPP FQKGVSPKQS SGHHLQWKRE QSAMENSPAN CPTD
101: TAVALADDSS VQHRLENESQ DRNDKKNLLV TKTQPGEAHI VNSNILVPQE HNGLHKLDLT KGQNVAQRRI SSTVIISPKM VAGDECYREG QHQKKDWSST
201: GGRSSSMRQF GVAAKTEHTL MQEESHDEHL GGNSSTRRLP VAVGIADGEV PESMRRPRNV WDRLGKPAME DQGLATEADN MHVENIMHKK AKLMVSEHER
301: RCRVNSSTEG DLFDRANSGN FSSSYPDVNT AHAYEPGEKS NRSRLTGRLN FGDVERNRHQ VRDVITQKST STPPVKSFGS QSLNEFTSKV KSSPASASEP
401: ARHANSLKGH VSASDKLSQL NMRLNSGTDV LQSQQISSPA QSKSGSSVRE DGGNYSNKPV KDEMLDVKLK LKQVELDMLK LRSKQAQINN GKQGALPSGP
501: HSNLEEDADA RTVLVTNVHF AATKEALSTH FMKCGTVLKL NMLTDAITGH PKGAAFVTFA DKESIGRALS LSGTSFYSRV LTVMRKAEAP PGFLASIQQI
601: GRPLPWNSPP FQKGVSPKQS SGHHLQWKRE QSAMENSPAN CPTD
001: MTKAVDGLTF PMSRVSESAS RLKTIISDML PRFTDDYSDD LSEYVTVLVC NGKSQRQASE DLEAFLKEQS WKFVVCLWEL LVKYFSQSNS ASGPKTDVDF
101: GSNDTLIKQG LSSRKYDDYD CKAADGTNSM NEQLISVTAP IDDIEAPVSP KVEKMKMSRQ ELIDSPCTRA RRRKKENWNS SGYSRKVLRS VIVSATQQPC
201: DRNPAKYEKS MNERSRTLKK RPYSPERELD SRFAPSGRAV SARYHDASLH QETEPHVSVW DRLGRASSEC VLDTESRTLS KFGIQTRETK VHQQHGPVFP
301: AAYSEQHSEI FQREVLAVGY RHRVPQFDKD RKPKSETITS TEPHIAYNLS RKRRYGMVSP NSGEFSYVPQ YKQAEQDFEK PSLLSHQSTK QDIFSEIKNV
401: KEKMQELELR IIQSKQLKKQ KVEERKPSPQ SGESQYQEDV SESRVIHVTN VYYAAKKEAI SMFFSSKCGA VQNVIVVTDP VTRHPKGTAF VTFATKESVG
501: KAVALSGTMF YSRPIKVRMH VIASGVVSAA PQIVTGS
101: GSNDTLIKQG LSSRKYDDYD CKAADGTNSM NEQLISVTAP IDDIEAPVSP KVEKMKMSRQ ELIDSPCTRA RRRKKENWNS SGYSRKVLRS VIVSATQQPC
201: DRNPAKYEKS MNERSRTLKK RPYSPERELD SRFAPSGRAV SARYHDASLH QETEPHVSVW DRLGRASSEC VLDTESRTLS KFGIQTRETK VHQQHGPVFP
301: AAYSEQHSEI FQREVLAVGY RHRVPQFDKD RKPKSETITS TEPHIAYNLS RKRRYGMVSP NSGEFSYVPQ YKQAEQDFEK PSLLSHQSTK QDIFSEIKNV
401: KEKMQELELR IIQSKQLKKQ KVEERKPSPQ SGESQYQEDV SESRVIHVTN VYYAAKKEAI SMFFSSKCGA VQNVIVVTDP VTRHPKGTAF VTFATKESVG
501: KAVALSGTMF YSRPIKVRMH VIASGVVSAA PQIVTGS
Arabidopsis Description
At2g24350 [Source:UniProtKB/TrEMBL;Acc:Q0WPW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.