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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 26228564
msms PMID: 26228564 doi
E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G10350.1 TraesCS4B01G094500.1 AT1G71800.1 18479511
AT5G10350.1 TraesCS4D01G091300.1 AT1G71800.1 18479511
AT5G10350.1 TraesCS6A01G316300.1 AT5G10350.1 18479511
AT5G10350.1 TraesCS6B01G346800.2 AT5G10350.1 18479511
AT5G10350.1 TraesCS6D01G295600.1 AT5G10350.1 18479511
AT5G10350.1 TraesCS7A01G177900.1 AT5G10350.1 18479511
AT5G10350.1 TraesCS7B01G083600.1 AT5G10350.1 18479511
AT5G10350.1 TraesCS7D01G179700.1 AT5G10350.1 18479511
AT5G10350.1 TraesCS4A01G258200.3 AT5G58040.1 18479511
AT5G10350.1 TraesCS4B01G056200.1 AT5G58040.1 18479511
AT5G10350.1 TraesCS4D01G056600.1 AT5G58040.1 18479511
AT5G10350.1 TraesCS6A01G316300.1 AT5G65260.1 18479511
AT5G10350.1 TraesCS6B01G346800.2 AT5G65260.1 18479511
AT5G10350.1 TraesCS6D01G295600.1 AT5G65260.1 18479511
AT5G10350.1 TraesCS7A01G177900.1 AT5G65260.1 18479511
AT5G10350.1 TraesCS7B01G083600.1 AT5G65260.1 18479511
AT5G10350.1 TraesCS7D01G179700.1 AT5G65260.1 18479511
AT5G65260.1 TraesCS2A01G174300.3 AT1G69120.1 11439126
AT5G65260.1 TraesCS2A01G261200.2 AT1G69120.1 11439126
AT5G65260.1 TraesCS2B01G200800.1 AT1G69120.1 11439126
AT5G65260.1 TraesCS2B01G281000.1 AT1G69120.1 11439126
AT5G65260.1 TraesCS2D01G181400.3 AT1G69120.1 11439126
AT5G65260.1 TraesCS2D01G262700.1 AT1G69120.1 11439126
AT5G65260.1 TraesCS5A01G391700.1 AT1G69120.1 11439126
AT5G65260.1 TraesCS5B01G396600.2 AT1G69120.1 11439126
AT5G65260.1 TraesCS5D01G401500.1 AT1G69120.1 11439126
AT5G65260.1 TraesCS6A01G316300.1 AT5G10350.1 18479511
AT5G65260.1 TraesCS6B01G346800.2 AT5G10350.1 18479511
AT5G65260.1 TraesCS6D01G295600.1 AT5G10350.1 18479511
AT5G65260.1 TraesCS7A01G177900.1 AT5G10350.1 18479511
AT5G65260.1 TraesCS7B01G083600.1 AT5G10350.1 18479511
AT5G65260.1 TraesCS7D01G179700.1 AT5G10350.1 18479511
AT5G65260.1 TraesCS4A01G258200.3 AT5G58040.1 18479511
AT5G65260.1 TraesCS4B01G056200.1 AT5G58040.1 18479511
AT5G65260.1 TraesCS4D01G056600.1 AT5G58040.1 18479511
AT5G65260.1 TraesCS6A01G316300.1 AT5G65260.1 18479511
AT5G65260.1 TraesCS6B01G346800.2 AT5G65260.1 18479511
AT5G65260.1 TraesCS6D01G295600.1 AT5G65260.1 18479511
AT5G65260.1 TraesCS7A01G177900.1 AT5G65260.1 18479511
AT5G65260.1 TraesCS7B01G083600.1 AT5G65260.1 18479511
AT5G65260.1 TraesCS7D01G179700.1 AT5G65260.1 18479511
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER88092 Sorghum nucleus 89.0 91.63
Zm00001d037200_P004 Maize extracellular, nucleus 87.56 90.15
Os06t0219600-01 Rice nucleus 85.65 87.75
TraesCS7D01G179700.1 Wheat nucleus 93.78 85.22
TraesCS7A01G177900.1 Wheat nucleus 93.78 85.22
GSMUA_Achr2P22250_001 Banana nucleus 77.03 74.54
KRH59303 Soybean nucleus 76.56 74.42
CDY37814 Canola nucleus 55.5 74.36
GSMUA_Achr6P10340_001 Banana nucleus 75.12 72.69
CDY33970 Canola nucleus 73.21 72.51
KRH43152 Soybean nucleus 74.64 71.56
GSMUA_Achr3P21300_001 Banana nucleus 73.68 71.3
Bra024372.1-P Field mustard nucleus 74.16 70.45
CDY08805 Canola nucleus, plasma membrane 74.16 70.45
PGSC0003DMT400041675 Potato nucleus 73.21 70.18
AT5G65260.1 Thale cress nucleus 73.68 70.0
CDY55162 Canola nucleus 73.68 70.0
AT5G10350.1 Thale cress nucleus 71.77 69.12
Solyc11g009090.1.1 Tomato nucleus 72.25 68.95
PGSC0003DMT400043273 Potato nucleus 70.33 68.06
TraesCS6B01G346800.2 Wheat nucleus 79.43 67.48
Zm00001d044869_P001 Maize nucleus 85.65 65.57
GSMUA_AchrUn_... Banana nucleus 63.16 63.46
CDY31306 Canola mitochondrion, nucleus, plasma membrane 29.67 60.78
Bra031905.1-P Field mustard mitochondrion, nucleus, plasma membrane 29.67 60.78
CDY33952 Canola cytosol, golgi, nucleus 59.33 58.49
VIT_00s0625g00040.t01 Wine grape cytosol 32.54 55.74
VIT_16s0039g02780.t01 Wine grape nucleus, plasma membrane, plastid 20.57 44.79
Solyc03g094090.2.1 Tomato nucleus 21.05 41.9
TraesCS2B01G352200.2 Wheat nucleus 29.67 9.05
TraesCS7B01G146300.1 Wheat nucleus 28.71 8.62
TraesCS2B01G290800.2 Wheat nucleus 24.88 8.07
Protein Annotations
EnsemblPlants:TraesCS7B01G083600.1EnsemblPlantsGene:TraesCS7B01G083600Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_domncoils:Coil
PANTHER:PTHR43987PANTHER:PTHR43987:SF5PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360
SUPFAM:SSF54928TIGR:cd12306MapMan:16.2.1.1.2:::
Description
No Description!
Coordinates
chr7B:+:94267847..94271780
Molecular Weight (calculated)
23532.6 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.898
Length
209 amino acids
Sequence
(BLAST)
001: MEDEEHEVYG QEIPVDGEDV DMGAGGDDAA KLHELDEMKR RLKEMEEEAA ALREMQAKVA KEMQGGDPNA TTSEAKEEMD SRSVFVGNVD YACTPEEVQQ
101: HFNSCGTVNR VTILTDKFGQ PKGFAYVEFV EAEAIQEAVK LSESELHGRQ IKVAPKRTNV PGLKQPRGGR GFNPYGGHPY MRPYPPPFYN PYGGYGRAPR
201: FRRPRRPFY
Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.