Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER88092 | Sorghum | nucleus | 89.0 | 91.63 |
Zm00001d037200_P004 | Maize | extracellular, nucleus | 87.56 | 90.15 |
Os06t0219600-01 | Rice | nucleus | 85.65 | 87.75 |
TraesCS7D01G179700.1 | Wheat | nucleus | 93.78 | 85.22 |
TraesCS7A01G177900.1 | Wheat | nucleus | 93.78 | 85.22 |
GSMUA_Achr2P22250_001 | Banana | nucleus | 77.03 | 74.54 |
KRH59303 | Soybean | nucleus | 76.56 | 74.42 |
CDY37814 | Canola | nucleus | 55.5 | 74.36 |
GSMUA_Achr6P10340_001 | Banana | nucleus | 75.12 | 72.69 |
CDY33970 | Canola | nucleus | 73.21 | 72.51 |
KRH43152 | Soybean | nucleus | 74.64 | 71.56 |
GSMUA_Achr3P21300_001 | Banana | nucleus | 73.68 | 71.3 |
Bra024372.1-P | Field mustard | nucleus | 74.16 | 70.45 |
CDY08805 | Canola | nucleus, plasma membrane | 74.16 | 70.45 |
PGSC0003DMT400041675 | Potato | nucleus | 73.21 | 70.18 |
AT5G65260.1 | Thale cress | nucleus | 73.68 | 70.0 |
CDY55162 | Canola | nucleus | 73.68 | 70.0 |
AT5G10350.1 | Thale cress | nucleus | 71.77 | 69.12 |
Solyc11g009090.1.1 | Tomato | nucleus | 72.25 | 68.95 |
PGSC0003DMT400043273 | Potato | nucleus | 70.33 | 68.06 |
TraesCS6B01G346800.2 | Wheat | nucleus | 79.43 | 67.48 |
Zm00001d044869_P001 | Maize | nucleus | 85.65 | 65.57 |
GSMUA_AchrUn_... | Banana | nucleus | 63.16 | 63.46 |
CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 29.67 | 60.78 |
Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 29.67 | 60.78 |
CDY33952 | Canola | cytosol, golgi, nucleus | 59.33 | 58.49 |
VIT_00s0625g00040.t01 | Wine grape | cytosol | 32.54 | 55.74 |
VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 20.57 | 44.79 |
Solyc03g094090.2.1 | Tomato | nucleus | 21.05 | 41.9 |
TraesCS2B01G352200.2 | Wheat | nucleus | 29.67 | 9.05 |
TraesCS7B01G146300.1 | Wheat | nucleus | 28.71 | 8.62 |
TraesCS2B01G290800.2 | Wheat | nucleus | 24.88 | 8.07 |
Protein Annotations
EnsemblPlants:TraesCS7B01G083600.1 | EnsemblPlantsGene:TraesCS7B01G083600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
SUPFAM:SSF54928 | TIGR:cd12306 | MapMan:16.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:94267847..94271780
Molecular Weight (calculated)
23532.6 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.898
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEHEVYG QEIPVDGEDV DMGAGGDDAA KLHELDEMKR RLKEMEEEAA ALREMQAKVA KEMQGGDPNA TTSEAKEEMD SRSVFVGNVD YACTPEEVQQ
101: HFNSCGTVNR VTILTDKFGQ PKGFAYVEFV EAEAIQEAVK LSESELHGRQ IKVAPKRTNV PGLKQPRGGR GFNPYGGHPY MRPYPPPFYN PYGGYGRAPR
201: FRRPRRPFY
101: HFNSCGTVNR VTILTDKFGQ PKGFAYVEFV EAEAIQEAVK LSESELHGRQ IKVAPKRTNV PGLKQPRGGR GFNPYGGHPY MRPYPPPFYN PYGGYGRAPR
201: FRRPRRPFY
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.