Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- plasma membrane 1
- mitochondrion 2
- plastid 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0037g00130.t01 | |
| VIT_16s0039g02780.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65260.1 | VIT_11s0037g00130.t01 | AT5G58040.1 | 18479511 |
| AT5G65260.1 | VIT_16s0039g02780.t01 | AT5G65260.1 | 18479511 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g094090.2.1 | Tomato | nucleus | 60.42 | 55.24 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 45.83 | 43.14 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 45.83 | 43.14 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 50.0 | 39.34 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 54.17 | 24.07 |
| AT5G65260.1 | Thale cress | nucleus | 52.08 | 22.73 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 51.04 | 22.69 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 46.88 | 22.17 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 48.96 | 21.76 |
| EER88092 | Sorghum | nucleus | 45.83 | 21.67 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 44.79 | 20.57 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 44.79 | 20.48 |
| Os02t0757900-02 | Rice | nucleus | 45.83 | 20.37 |
| KXG30711 | Sorghum | nucleus | 44.79 | 20.28 |
| Os06t0219600-01 | Rice | nucleus | 42.71 | 20.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.71 | 19.71 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 43.75 | 19.35 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 44.79 | 18.7 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 44.79 | 18.7 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 45.83 | 17.89 |
| Zm00001d052198_P002 | Maize | nucleus | 44.79 | 16.17 |
| Zm00001d044869_P001 | Maize | nucleus | 44.79 | 15.75 |
| Zm00001d018112_P004 | Maize | nucleus | 45.83 | 15.44 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 30.21 | 13.06 |
| VIT_03s0017g01220.t01 | Wine grape | nucleus | 19.79 | 10.56 |
| VIT_00s1351g00010.t01 | Wine grape | cytosol, nucleus, plastid | 7.29 | 4.83 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 4.17 | 3.88 |
| VIT_04s0008g03040.t01 | Wine grape | nucleus | 16.67 | 3.54 |
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 3.12 | 3.41 |
| VIT_04s0008g03030.t01 | Wine grape | cytosol, mitochondrion, nucleus | 6.25 | 3.19 |
| VIT_13s0064g01190.t01 | Wine grape | nucleus | 18.75 | 2.57 |
| VIT_05s0029g00530.t01 | Wine grape | plastid | 1.04 | 2.22 |
| VIT_10s0042g00630.t01 | Wine grape | cytosol | 1.04 | 2.22 |
Protein Annotations
| ArrayExpress:VIT_16s0039g02780 | EMBL:FN595750 | EnsemblPlants:VIT_16s0039g02780.t01 | EnsemblPlantsGene:VIT_16s0039g02780 | ncoils:Coil | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF3 | ProteinID:CCB50628 | ProteinID:CCB50628.1 | SEG:seg | UniParc:UPI0002109601 | UniProt:F6HEI2 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:-:3174629..3181211
Molecular Weight (calculated)
11036.7 Da
IEP (calculated)
3.929
GRAVY (calculated)
-0.825
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MEQQEHEHEH EVYGGEIPDE GEMDADAEDV DMVSRPEDDS DPNSKNIEDM RKRLKEIEEE AGALREMQAK VEKEMGAVQG LVFLYFALSC FVNEFL
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.