Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0017g01220.t01 | Wine grape | nucleus | 65.52 | 52.78 |
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 18.62 | 30.68 |
| VIT_05s0029g00530.t01 | Wine grape | plastid | 6.21 | 20.0 |
| VIT_10s0042g00630.t01 | Wine grape | cytosol | 6.21 | 20.0 |
| VIT_04s0008g03030.t01 | Wine grape | cytosol, mitochondrion, nucleus | 21.38 | 16.49 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 6.9 | 8.2 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 4.83 | 7.29 |
| VIT_13s0064g01190.t01 | Wine grape | nucleus | 26.9 | 5.57 |
| VIT_04s0008g03040.t01 | Wine grape | nucleus | 10.34 | 3.32 |
Protein Annotations
| EntrezGene:100855316 | wikigene:100855316 | MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ProteinID:CBI33270 | ProteinID:CBI33270.3 |
| UniProt:D7TRZ5 | EMBL:FN596081 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100855316 | wikigene:LOC100855316 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0001BE3E6F | ArrayExpress:VIT_00s1351g00010 | EnsemblPlantsGene:VIT_00s1351g00010 | EnsemblPlants:VIT_00s1351g00010.t01 | unigene:Vvi.3025 |
| RefSeq:XP_003635560 | RefSeq:XP_003635560.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:-:38740511..38743997
Molecular Weight (calculated)
17377.1 Da
IEP (calculated)
9.700
GRAVY (calculated)
-0.588
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDCCHLQVM WQKTLNVEKL IHFVDYACTP EEVQQHFQSC GTVNRVTILT DKYGQPKGFA YVEFLEVEAV QEALLLNESE LHGRQLKVLA KRTNVPGMKQ
101: FRPRRFNPYM GYRFRRPYVP PYFYSPYGYG KAPRFRRPMR YMPYY
101: FRPRRFNPYM GYRFRRPYVP PYFYSPYGYG KAPRFRRPMR YMPYY
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.