Factsheet for VIT_03s0017g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1351g00010.t01	Wine grape	cytosol, nucleus, plastid	52.78	65.52
PGSC0003DMT400080650	Potato	nucleus	69.44	63.78
Solyc10g047360.1.1	Tomato	nucleus	68.89	63.27
KRH10563	Soybean	nucleus	68.89	62.94
KRH43887	Soybean	nucleus	67.22	61.42
VIT_00s0625g00040.t01	Wine grape	cytosol	21.67	31.97
VIT_06s0009g02150.t01	Wine grape	cytosol	13.33	27.27
VIT_05s0029g00530.t01	Wine grape	plastid	5.0	20.0
VIT_10s0042g00630.t01	Wine grape	cytosol	5.0	20.0
VIT_16s0039g02780.t01	Wine grape	nucleus, plasma membrane, plastid	10.56	19.79
VIT_04s0008g03030.t01	Wine grape	cytosol, mitochondrion, nucleus	17.22	16.49
VIT_13s0064g01190.t01	Wine grape	nucleus	30.0	7.71
VIT_04s0008g03040.t01	Wine grape	nucleus	13.33	5.31

Protein Annotations

EntrezGene:100258174	wikigene:100258174	MapMan:16.2.1.1.2	Gene3D:3.30.70.330	ProteinID:CBI34067	ProteinID:CBI34067.3
ncoils:Coil	UniProt:D7TU93	EMBL:FN596248	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100258174	wikigene:LOC100258174	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	TIGR:TC53673	UniParc:UPI0001BE40E5	ArrayExpress:VIT_03s0017g01220	EnsemblPlantsGene:VIT_03s0017g01220
EnsemblPlants:VIT_03s0017g01220.t01	RefSeq:XP_002273112	RefSeq:XP_002273112.1	RefSeq:XP_002273141	RefSeq:XP_002273141.1	SEG:seg

Description

No Description!

Coordinates

chr3:-:16968724..16983770

Molecular Weight (calculated)

20523.2 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.818

Length

180 amino acids

Sequence
(BLAST)

001: MGGPESHDEH QIEDLNQRLE QMMEEKPKAH NDMPSVQDPA AAAAAAAQAS REEVDSRSVF VGNVDYSCTP EEVQQHFQAC GTVNRVTIRS NKYGQPKGYA
101: YVEFLETEAV QEALLLNESE LHGRQLKVSA KRTNVPGLKQ FRPRRVGFRS RSTHMPPYLC PYGYGKVPRF RMPMRYNPYY

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.