Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g047360.1.1 | Tomato | nucleus | 97.96 | 97.96 |
| KRH10563 | Soybean | nucleus | 81.63 | 81.22 |
| KRH43887 | Soybean | nucleus | 80.1 | 79.7 |
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 40.31 | 74.53 |
| VIT_03s0017g01220.t01 | Wine grape | nucleus | 63.78 | 69.44 |
| PGSC0003DMT400041675 | Potato | nucleus | 75.0 | 67.43 |
| PGSC0003DMT400043273 | Potato | nucleus | 73.98 | 67.13 |
Protein Annotations
| EntrezGene:102604568 | MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1D3S9 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400031406 | PGSC:PGSC0003DMG400031406 | EnsemblPlants:PGSC0003DMT400080650 | PFscan:PS50102 | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001EE97E3 |
| RefSeq:XP_006359788.1 | SEG:seg | : | : | : | : |
Description
Poly-A binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031406]
Coordinates
chr10:-:30116353..30123663
Molecular Weight (calculated)
22095.2 Da
IEP (calculated)
6.549
GRAVY (calculated)
-0.704
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDVEMAAG ENGAGELDDM KKRLKEMEDE AVALREMQAK VEKEMGSVQD PAAAAANQAN KEEVDSRSVF VGNVDYSCTP EEVQQHFQAC GTVNRVTIRT
101: NKFGQPKGYA YVEFVEPEAV QEALLLNESE LHGRQLKVSA KRTNVPGMKP YRARRPNPYM GFRGRTPFMP APYFFPPFGY GKIPRARAPM RYSPYF
101: NKFGQPKGYA YVEFVEPEAV QEALLLNESE LHGRQLKVSA KRTNVPGMKP YRARRPNPYM GFRGRTPFMP APYFFPPFGY GKIPRARAPM RYSPYF
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.