Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0009g02150.t01 | Wine grape | cytosol | 18.62 | 39.77 |
| VIT_05s0029g00530.t01 | Wine grape | plastid | 7.98 | 33.33 |
| VIT_10s0042g00630.t01 | Wine grape | cytosol | 7.98 | 33.33 |
| VIT_00s1351g00010.t01 | Wine grape | cytosol, nucleus, plastid | 16.49 | 21.38 |
| VIT_03s0017g01220.t01 | Wine grape | nucleus | 16.49 | 17.22 |
| Os04t0306800-01 | Rice | nucleus | 40.96 | 11.86 |
| TraesCS2B01G290800.2 | Wheat | nucleus | 38.3 | 11.18 |
| TraesCS2D01G271900.2 | Wheat | nucleus | 38.3 | 11.18 |
| TraesCS2A01G272600.1 | Wheat | nucleus | 38.3 | 11.15 |
| HORVU2Hr1G066510.2 | Barley | mitochondrion | 37.77 | 10.38 |
| VIT_13s0064g01190.t01 | Wine grape | nucleus | 29.79 | 8.0 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 4.26 | 6.56 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 3.19 | 6.25 |
| VIT_04s0008g03040.t01 | Wine grape | nucleus | 7.98 | 3.32 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | ProteinID:CCB46677 | ProteinID:CCB46677.1 | UniProt:F6H2W6 | EMBL:FN595231 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45275 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000210A673 | ArrayExpress:VIT_04s0008g03030 | EnsemblPlantsGene:VIT_04s0008g03030 | EnsemblPlants:VIT_04s0008g03030.t01 |
Description
No Description!
Coordinates
chr4:-:2520464..2523783
Molecular Weight (calculated)
20371.1 Da
IEP (calculated)
10.429
GRAVY (calculated)
-0.354
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIVHHTVSR GTLRHPEEDI EPRTVYVTNV HFAATKEALS NHFAKCGLVV NVVILTDETI AQPKRSAFIT FASVESVNKA LALSGTSFFS RTVKVFRKAD
101: MATGKSAPPQ DAGMPVQARF THIKGKIAVD RPLYSTPHLQ WRRESIPTPS EPSASANIQE KSPSESSASA NIQKKSTAGS GSQQPFPS
101: MATGKSAPPQ DAGMPVQARF THIKGKIAVD RPLYSTPHLQ WRRESIPTPS EPSASANIQE KSPSESSASA NIQKKSTAGS GSQQPFPS
001: MNEQLISVTA PIDDIEAPVS PKVEKMKMSR QELIDSPCTR ARRRKKENWN SSGYSRKVLR SVIVSATQQP CDRNPAKYEK SMNERSRTLK KRPYSPEREL
101: DSRFAPSGRA VSARYHDASL HQETEPHVSV WDRLGRASSE CVLDTESRTL SKFGIQTRET KVHQQHGPVF PAAYSEQHSE IFQREVLAVG YRHRVPQFDK
201: DRKPKSETIT STEPHIAYNL SRKRRYGMVS PNSGEFSYVP QYKQAEQDFE KPSLLSHQST KQDIFSEIKN VKEKMQELEL RIIQSKQLKK QKVEERKPSP
301: QSGESQYQED VSESRVIHVT NVYYAAKKEA ISMFFSSKCG AVQNVIVVTD PVTRHPKGTA FVTFATKESV GKAVALSGTM FYSRPIKVRM HVIASGVVSA
401: APQIVTGS
101: DSRFAPSGRA VSARYHDASL HQETEPHVSV WDRLGRASSE CVLDTESRTL SKFGIQTRET KVHQQHGPVF PAAYSEQHSE IFQREVLAVG YRHRVPQFDK
201: DRKPKSETIT STEPHIAYNL SRKRRYGMVS PNSGEFSYVP QYKQAEQDFE KPSLLSHQST KQDIFSEIKN VKEKMQELEL RIIQSKQLKK QKVEERKPSP
301: QSGESQYQED VSESRVIHVT NVYYAAKKEA ISMFFSSKCG AVQNVIVVTD PVTRHPKGTA FVTFATKESV GKAVALSGTM FYSRPIKVRM HVIASGVVSA
401: APQIVTGS
Arabidopsis Description
At2g24350 [Source:UniProtKB/TrEMBL;Acc:Q0WPW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.