Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0029g00530.t01 | Wine grape | plastid | 50.0 | 97.78 |
| VIT_10s0042g00630.t01 | Wine grape | cytosol | 50.0 | 97.78 |
| KRH66489 | Soybean | mitochondrion | 61.36 | 35.29 |
| VIT_00s1351g00010.t01 | Wine grape | cytosol, nucleus, plastid | 30.68 | 18.62 |
| VIT_04s0008g03030.t01 | Wine grape | cytosol, mitochondrion, nucleus | 39.77 | 18.62 |
| VIT_03s0017g01220.t01 | Wine grape | nucleus | 27.27 | 13.33 |
| VIT_13s0064g01190.t01 | Wine grape | nucleus | 80.68 | 10.14 |
| CDY52667 | Canola | nucleus | 62.5 | 9.17 |
| CDY50537 | Canola | nucleus | 62.5 | 9.05 |
| KRH43491 | Soybean | nucleus | 69.32 | 8.96 |
| KRH13922 | Soybean | nucleus | 68.18 | 8.9 |
| Bra038740.1-P | Field mustard | nucleus | 61.36 | 8.77 |
| CDX73810 | Canola | nucleus | 60.23 | 8.72 |
| Solyc01g086980.2.1 | Tomato | nucleus | 65.91 | 8.64 |
| AT3G12640.3 | Thale cress | nucleus | 64.77 | 8.61 |
| CDY00789 | Canola | nucleus | 57.95 | 8.5 |
| Bra001462.1-P | Field mustard | nucleus | 60.23 | 8.44 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 64.77 | 8.02 |
| Zm00001d031422_P006 | Maize | nucleus | 62.5 | 7.93 |
| EES15409 | Sorghum | nucleus | 62.5 | 7.93 |
| Zm00001d052888_P004 | Maize | nucleus | 62.5 | 7.91 |
| HORVU7Hr1G050300.3 | Barley | nucleus | 61.36 | 7.78 |
| TraesCS7A01G245200.1 | Wheat | nucleus | 61.36 | 7.76 |
| TraesCS7B01G146300.1 | Wheat | nucleus | 61.36 | 7.76 |
| TraesCS7D01G243800.1 | Wheat | nucleus | 61.36 | 7.76 |
| Os08t0504600-01 | Rice | nucleus | 60.23 | 7.75 |
| TraesCS2B01G352200.2 | Wheat | nucleus | 52.27 | 6.72 |
| TraesCS2A01G330100.3 | Wheat | nucleus | 52.27 | 6.7 |
| TraesCS2D01G332600.2 | Wheat | nucleus | 52.27 | 6.65 |
| HORVU2Hr1G081930.1 | Barley | nucleus | 52.27 | 6.65 |
| KXG26527 | Sorghum | nucleus | 52.27 | 6.47 |
| Zm00001d025673_P005 | Maize | nucleus | 50.0 | 6.23 |
| Zm00001d003329_P003 | Maize | nucleus | 51.14 | 5.51 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 3.41 | 3.12 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 3.41 | 2.46 |
| VIT_04s0008g03040.t01 | Wine grape | nucleus | 12.5 | 2.43 |
| Os04t0472400-00 | Rice | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | ProteinID:CCB49118 | ProteinID:CCB49118.1 | UniProt:F6HAF8 | EMBL:FN595504 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45275 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002109DDE | ArrayExpress:VIT_06s0009g02150 | EnsemblPlantsGene:VIT_06s0009g02150 | EnsemblPlants:VIT_06s0009g02150.t01 |
Description
No Description!
Coordinates
chr6:-:14483773..14484945
Molecular Weight (calculated)
9836.0 Da
IEP (calculated)
10.280
GRAVY (calculated)
-0.039
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MFIFAATKDS LSRHFNEFGE VVKVIRVTDA ATRQPKGSDY VEFMRKEAAG HALSLDGTSF MSRILKVVKR NSTRQEAAPC NILGFLLI
001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND
Arabidopsis Description
RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.