Factsheet for TraesCS2D01G332600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G330100.3	Wheat	nucleus	95.81	96.51
TraesCS2B01G352200.2	Wheat	nucleus	95.09	96.06
HORVU2Hr1G081930.1	Barley	nucleus	95.23	95.23
Os04t0472400-00	Rice	mitochondrion	9.39	68.42
KXG26527	Sorghum	nucleus	65.03	63.29
Zm00001d025673_P005	Maize	nucleus	64.45	63.17
Zm00001d003329_P003	Maize	nucleus	63.58	53.92
VIT_06s0009g02150.t01	Wine grape	cytosol	6.65	52.27
KRH66489	Soybean	mitochondrion	10.4	47.06
VIT_10s0042g00630.t01	Wine grape	cytosol	2.89	44.44
VIT_05s0029g00530.t01	Wine grape	plastid	2.89	44.44
VIT_13s0064g01190.t01	Wine grape	nucleus	43.5	43.0
GSMUA_Achr9P16060_001	Banana	golgi	40.9	39.8
Solyc01g086980.2.1	Tomato	nucleus	37.72	38.9
KRH43491	Soybean	nucleus	37.43	38.03
KRH13922	Soybean	nucleus	36.85	37.83
CDY52667	Canola	nucleus	32.23	37.17
CDY50537	Canola	nucleus	32.37	36.84
CDY00789	Canola	nucleus	31.65	36.5
CDX73810	Canola	nucleus	31.94	36.35
Bra001462.1-P	Field mustard	nucleus	32.8	36.15
Bra038740.1-P	Field mustard	nucleus	32.08	36.04
AT3G12640.3	Thale cress	nucleus	34.1	35.65
TraesCS7D01G243800.1	Wheat	nucleus	34.25	34.05
TraesCS7D01G179700.1	Wheat	nucleus	9.1	27.39
TraesCS1D01G218400.1	Wheat	nucleus	8.09	27.32
TraesCS6D01G295600.1	Wheat	nucleus	8.24	25.68
TraesCS2D01G271900.2	Wheat	nucleus	18.93	20.34

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275
InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS2D01G332600
EnsemblPlants:TraesCS2D01G332600.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:426420272..426428608

Molecular Weight (calculated)

75998.7 Da

IEP (calculated)

10.184

GRAVY (calculated)

-0.717

Length

692 amino acids

Sequence
(BLAST)

001: MDGGERTFKA NFSAEGVALL RQRVRAKLHE LMGDYTDDTL VEYVVVLLRN GRRKDEAAKE LQVFLGDDNN AFVSWLWDHL SSNLHLYVQP KAVSANDEAK
101: NTRSTARGLP LHNSSSNAQT SRVPEAETQK TTKVQPKREW GGIVREQSDV VPLRSVVAPV SQAEEETNHT QAVRRTRSPD MYNHRKRGRE EDTRPAKKTS
201: HEVIGAPRRL LQFAVRDAVR PVQPPTPRSE SSSKRLRSVV STVESDSAAN GRLQKMKSDV RVPGATAAFR AAAEAAEDVL KDRYSSESVF DRLGRRPLLT
301: ATEEPFDFRE KDPEDGEYKH IDNVRAENQV EFHERNQYVA RDACMYDSGT EKAADSAFDI DRYDETGAVR YNGVNPYQNK LSSSGGKESS VKRYNKAEGA
401: AGVRSRRSIP QDTHASSGPR PSEKILNISA NNNTRNPPYH ETARNAGTFE HQVPIGKKDV GSIKSNVTVA HAKVTDMTDK SKDLVHSSSL LVATKASSVA
501: GGSTGQPESA PDSRTVFVSN VHFGATKDGL SCHFNKFGAV LKTLIVSDGA TGQPTGSAYI EFLEKESAEK ALTLNGTSFM SRILKVVRKS SVEVPQQPGW
601: SRGVRASPFA SRLIRTAYPR PTFPGAMRGR LAIRGNARSF QWKRGAADSV DAGKPSQATP VTPGSQMVTP VTRSFTYTRT EPKQDVGATA NV

Best Arabidopsis Sequence Match ( AT3G12640.1 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.