Factsheet for TraesCS2B01G352200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G330100.3	Wheat	nucleus	96.79	96.51
TraesCS2D01G332600.2	Wheat	nucleus	96.06	95.09
HORVU2Hr1G081930.1	Barley	nucleus	94.89	93.93
Os04t0472400-00	Rice	mitochondrion	9.49	68.42
KXG26527	Sorghum	nucleus	65.99	63.57
Zm00001d025673_P005	Maize	nucleus	64.96	63.03
Zm00001d003329_P003	Maize	nucleus	64.53	54.17
VIT_06s0009g02150.t01	Wine grape	cytosol	6.72	52.27
KRH66489	Soybean	mitochondrion	10.51	47.06
VIT_05s0029g00530.t01	Wine grape	plastid	2.92	44.44
VIT_10s0042g00630.t01	Wine grape	cytosol	2.92	44.44
VIT_13s0064g01190.t01	Wine grape	nucleus	44.09	43.14
GSMUA_Achr9P16060_001	Banana	golgi	40.88	39.38
KRH43491	Soybean	nucleus	38.69	38.91
Solyc01g086980.2.1	Tomato	nucleus	37.81	38.6
KRH13922	Soybean	nucleus	37.81	38.43
CDY52667	Canola	nucleus	32.41	37.0
CDY50537	Canola	nucleus	32.41	36.51
CDX73810	Canola	nucleus	31.97	36.02
CDY00789	Canola	nucleus	31.53	36.0
Bra001462.1-P	Field mustard	nucleus	32.99	35.99
Bra038740.1-P	Field mustard	nucleus	32.26	35.88
AT3G12640.3	Thale cress	nucleus	34.31	35.5
TraesCS7B01G146300.1	Wheat	nucleus	35.47	34.91
TraesCS7B01G083600.1	Wheat	nucleus	9.05	29.67
TraesCS6B01G346800.2	Wheat	nucleus	9.64	26.83
TraesCS2B01G290800.2	Wheat	nucleus	18.98	20.19

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275
InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS2B01G352200
EnsemblPlants:TraesCS2B01G352200.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:503440428..503447582

Molecular Weight (calculated)

75276.9 Da

IEP (calculated)

10.255

GRAVY (calculated)

-0.728

Length

685 amino acids

Sequence
(BLAST)

001: MDGGERTFKA NFTAEGVALL RQRVRAKLHE LMGDYTDDTL VEYVVVLLRN GRRKDEAAKE LQVFLGDDNN AFVSWLWDHL SSNLHLYVQP KAVSANDEAK
101: NTRSTARGLS VQTSRVPEAE TQKTTRVQPK REWGGIVREQ SEAVPLRSVV APVSHAEDKT NHTQAVRRTR SPDMHNHRKR GREEDTRPAK KTSHEVIGAP
201: RRLLQFAVRD AVRPVQPPTP RSELSSKRLR SVVSTVESDS AANGRSQKMK SDVRVPGATA AFRAAAEAAE DVLKDRYSSE SVFDRLGRRP LLTTTEEPFD
301: FREKDPEDGE YEHIDNVRAE NQVEFRERNQ YVARDTCMYD SGTEKAADSA FDIDRYDDTG AVRYNGVNPY QNKLPSSGGK ESSVKRYNKP EGAAGVRSGR
401: SIAQDTHASS GPRPSEKILN ISANNNTRNP PYHETARNVG TFEHQVPIGK KDVGSIKSNA TVAHAKVTRM TDKSKDLVHS SSLLEAAKAS SVAGGSTGQP
501: ESAPDSRTVF VSNVHFGATK DGLSCHFNKF GAVLKTLIVS DGATGQPTGS AYIEFLEKES AEKALTLNGT SFMSRILKVV RKSSVEVPQQ PGWSRGVRAS
601: PFASRLVRTA YPRPTFPGAM RGRLAIRGNA RSFQWKRGAA DSVDAGKPSQ ATPVTPGSQM VTPVTRSFTY TRTEPKQDVG ATANV

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.