CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73810	Canola	nucleus	92.83	91.61
CDY52667	Canola	nucleus	77.83	77.83
CDY50537	Canola	nucleus	78.83	77.8
AT3G12640.3	Thale cress	nucleus	78.33	71.0
VIT_06s0009g02150.t01	Wine grape	cytosol	8.5	57.95
KRH66489	Soybean	mitochondrion	12.17	47.71
KRH43491	Soybean	nucleus	43.33	38.18
KRH13922	Soybean	nucleus	42.5	37.83
Solyc01g086980.2.1	Tomato	nucleus	41.33	36.96
Os04t0472400-00	Rice	mitochondrion	5.5	34.74
TraesCS2D01G332600.2	Wheat	nucleus	36.5	31.65
HORVU2Hr1G081930.1	Barley	nucleus	36.5	31.65
TraesCS2A01G330100.3	Wheat	nucleus	36.17	31.59
TraesCS2B01G352200.2	Wheat	nucleus	36.0	31.53
KXG26527	Sorghum	nucleus	36.33	30.66
Zm00001d025673_P005	Maize	nucleus	35.5	30.17
GSMUA_Achr9P16060_001	Banana	golgi	35.33	29.82
Os08t0504600-01	Rice	nucleus	32.83	28.8
EES15409	Sorghum	nucleus	32.33	27.95
Zm00001d031422_P006	Maize	nucleus	32.0	27.67
Zm00001d052888_P004	Maize	nucleus	31.83	27.48
TraesCS7A01G245200.1	Wheat	nucleus	31.5	27.16
CDY37814	Canola	nucleus	7.0	26.92
TraesCS7B01G146300.1	Wheat	nucleus	31.17	26.87
TraesCS7D01G243800.1	Wheat	nucleus	31.17	26.87
HORVU7Hr1G050300.3	Barley	nucleus	31.0	26.8
CDY33970	Canola	nucleus	9.33	26.54
CDX71690	Canola	nucleus	10.0	26.43
CDY16338	Canola	nucleus	10.17	26.41
CDY08805	Canola	nucleus, plasma membrane	9.67	26.36
CDY05837	Canola	nucleus	9.83	25.99
CDY55162	Canola	nucleus	9.5	25.91
Zm00001d003329_P003	Maize	nucleus	34.83	25.61
CDX91567	Canola	nucleus	9.67	25.44
CDY38851	Canola	nucleus	9.5	25.33
CDY32641	Canola	nucleus	9.5	25.33
CDY33952	Canola	cytosol, golgi, nucleus	8.5	24.06
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	4.0	23.53

Protein Annotations

Gene3D:1.20.1390.10	Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078EJ40	EnsemblPlants:CDY00789	ProteinID:CDY00789
ProteinID:CDY00789.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00110683001	InterPro:IPR000504	InterPro:IPR002483
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275
InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE1326
SEG:seg	:	:	:	:	:

Description

BnaC03g37730D

Coordinates

chrLK031921:+:1140248..1143325

Molecular Weight (calculated)

65810.6 Da

IEP (calculated)

9.780

GRAVY (calculated)

-0.751

Length

600 amino acids

Sequence
(BLAST)

001: MGSADPVDDR TFNGDFSEEG VGKLKERVKV KLKEYMGDYT DDILVEYVIV LLKNGRRKEE AENELKIFLA DDSGSFVAWL WDHLGESMDE YFTISIQNED
101: TALVQMESES EKGRSGARRG RGWRSQLTNA PDVPPLLSSE SQSRRKRSKT DGSRSEQMEA KPNVSSRLLQ FAMRDALAIS KPTEPSLKRL RSVVSASTQD
201: SSDPNPAQKI RSAARVVNPM ATVIKAVAEA AEDAKNSKSG RSVFDRISHT TGFSETLGEV STQNEEHRNF NEEQEPVQHH YTQRLDNNGV YVENMATFDT
301: GLQPNFSSDR SKLGSNVNVS HPSSFAGNRI NNPRSLQDRL VDDPRRVKGT NYQNHLTEVA TKQKTAGFSG NAGKTVKLEE QMKVPDVGLQ KYMDRGRVVS
401: SEATIGSGSV KPVPSAREDT ATKKSVPGTL STTRPLEDAS SRTIFVANVH FGATKDSLSR HFNKCGEVLK AVIVTDPATG QPSGSAYIEF TRKEAADNAS
501: SLDGTSFMSR ILKIAKGSNG QQQQEAASWA RAGRYARASP YRRGIPGGAF RGRPVVRAGG ARSMQWKRDS AETGNNIAAP NPRSMTYVRT ESQSDGHATV

Best Arabidopsis Sequence Match ( AT3G12640.1 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEAQSQR KRSRTDDSRN EQREAKPDVS RRLLQFAVRD ALAISRPANS
201: STESSLKRLR SVVSTSTQNS SDPDPARKIR SVARVVNPMA TVMKAVAEAA EDAKKPKSGR SVFDRISHST GSETLDQNMV LGEVSPKDEE SRNFSQGQEA
301: VQLQYTQSLA NNGVYFENMT TNDTGLNPDF SSDRGRLGSS VNVSHPSTYL GNRINNPNSL QHRLVDDSKR VKGTNYQNRL PEVATKHKTA SFSGNIDTGK
401: TVKLEEQRKI PDVGLQRYMD EGRLVSSEAT TQLSTQKILG DTIGNGNVKP AASVKEESTT NKSVPGTLST TRPLEDASSR TIFVANVHFG ATKDSLSRHF
501: NKFGEVLKAF IVTDPATGQP SGSAYIEFTR KEAAENALSL DGTSFMSRIL KIVKGSNGQN QEAASSMSWS RGGRFTRAPS YFRGGAVRGR SVVRGGGRSM
601: QWKRDSADTG NNNNVAPNNA RSLTYVRAES KSDGVAND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.