Factsheet for Zm00001d003329_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26527	Sorghum	nucleus	75.37	86.5
Zm00001d025673_P005	Maize	nucleus	73.28	84.7
TraesCS2B01G352200.2	Wheat	nucleus	54.17	64.53
TraesCS2A01G330100.3	Wheat	nucleus	53.92	64.05
TraesCS2D01G332600.2	Wheat	nucleus	53.92	63.58
HORVU2Hr1G081930.1	Barley	nucleus	53.43	63.01
Os04t0472400-00	Rice	mitochondrion	6.99	60.0
VIT_06s0009g02150.t01	Wine grape	cytosol	5.51	51.14
KRH66489	Soybean	mitochondrion	8.58	45.75
VIT_05s0029g00530.t01	Wine grape	plastid	2.45	44.44
VIT_10s0042g00630.t01	Wine grape	cytosol	2.45	44.44
VIT_13s0064g01190.t01	Wine grape	nucleus	34.93	40.71
GSMUA_Achr9P16060_001	Banana	golgi	32.6	37.41
Solyc01g086980.2.1	Tomato	nucleus	30.02	36.51
CDY52667	Canola	nucleus	26.47	36.0
KRH13922	Soybean	nucleus	29.53	35.76
KRH43491	Soybean	nucleus	29.78	35.68
CDY50537	Canola	nucleus	26.23	35.2
CDY00789	Canola	nucleus	25.61	34.83
CDX73810	Canola	nucleus	25.74	34.54
Bra038740.1-P	Field mustard	nucleus	25.98	34.42
Bra001462.1-P	Field mustard	nucleus	26.47	34.39
AT3G12640.3	Thale cress	nucleus	27.82	34.29
Zm00001d031422_P006	Maize	nucleus	28.19	33.14
Zm00001d052888_P004	Maize	nucleus	28.06	32.95
Zm00001d037200_P004	Maize	extracellular, nucleus	7.11	28.57
Zm00001d044869_P001	Maize	nucleus	7.97	23.81
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	2.94	23.3
Zm00001d052198_P002	Maize	nucleus	7.11	21.8
Zm00001d018112_P004	Maize	nucleus	7.48	21.4

Protein Annotations

EntrezGene:103646328	Gene3D:3.30.70.330	MapMan:35.2	UniProt:A0A1D6E8K9	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM16773.1
PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008448C94	EnsemblPlantsGene:Zm00001d003329	EnsemblPlants:Zm00001d003329_P003	EnsemblPlants:Zm00001d003329_T003
SEG:seg	:	:	:	:	:

Description

RNA binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr2:-:40262906..40272959

Molecular Weight (calculated)

89171.0 Da

IEP (calculated)

10.285

GRAVY (calculated)

-0.593

Length

816 amino acids

Sequence
(BLAST)

001: MDGGEDRTFK ANFTSEGVTM LQDRVKEKLS ELMGDYSDDT LAEYVVVLLR NGRHKDEAAK ELHVFLGDDN DAFVSWLWDH LSSNLHLYVQ PKAASSKDDT
101: RSSHNAARGL PVHSVISSTQ VNHEPEAETQ KTVITHKKKD WGHRKRDWGT IGRGQSETVP LRSVVDNVSL AKEKDLHESH ADEKAFHKSH SVRRTRSPDM
201: HNHRKRSREA DVRSTKSATH PVNGAPRRLL QFAVRDAVRT VPPVTSGSES ASKRLCSVVS TLASDSTLDI THIRLQKTNS DLRIPVATAA LRAAAEAAED
301: ALKDSFCGSV FSRLGRMPTI NSSEQSPDRR SQDLEGKEYE NIDNIQAENQ VEFYGRNQHG GSDVYMRDRR TEEATGSLSN IDEYGHNSSV RYNGLGSLRS
401: ALPASGGKES LVLGYVRGAS EVRSGRLIAQ GPPAGSGPRS SEKILNVSGN TKTQKLRTHV TRDALAFDPQ VPMEKVSGAR KSIGQGPHAG SGPRPSERIL
501: NVSGNTNTQK LPTHVTRDDL AFDPQVPMEK VADARKSHVK IAHANDMSMT TDKSKVRFLS VFSRAPIPKI IHLIYFKISK CFIPLYVQCL EVSSSLNLML
601: SKNAPQDLIQ SSSMLEAQKA TSGAAGSNTT GQPEGGSDSR TVFVSNVHFG ATKDALSRHF NKFGAILKTH IVTDGVTGQS TGSAYIEFLH KESAEQALTL
701: NGASFMLRIL KVVRKNSTEA TRSPGLLRVS RGSPFASRLI RTAYPRPTFP GAIRGRLPLR GVAQSLQWKR SATDSSNAVK PSQAAPSAPG NQLVTPTPRS
801: FTYTRTEPKP NDGAMA

Best Arabidopsis Sequence Match ( AT3G12640.2 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.