Factsheet for Bra038740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50537	Canola	nucleus	94.32	95.56
CDY52667	Canola	nucleus	89.77	92.17
Bra001462.1-P	Field mustard	nucleus	78.73	77.23
AT3G12640.3	Thale cress	nucleus	75.97	70.69
VIT_06s0009g02150.t01	Wine grape	cytosol	8.77	61.36
KRH66489	Soybean	mitochondrion	11.85	47.71
KRH43491	Soybean	nucleus	42.37	38.33
Solyc01g086980.2.1	Tomato	nucleus	40.75	37.41
KRH13922	Soybean	nucleus	40.91	37.39
HORVU2Hr1G081930.1	Barley	nucleus	37.01	32.95
TraesCS2A01G330100.3	Wheat	nucleus	36.2	32.46
TraesCS2B01G352200.2	Wheat	nucleus	35.88	32.26
TraesCS2D01G332600.2	Wheat	nucleus	36.04	32.08
Os04t0472400-00	Rice	mitochondrion	4.87	31.58
KXG26527	Sorghum	nucleus	36.36	31.5
Zm00001d025673_P005	Maize	nucleus	35.06	30.59
Os08t0504600-01	Rice	nucleus	33.93	30.56
GSMUA_Achr9P16060_001	Banana	golgi	34.58	29.96
Zm00001d031422_P006	Maize	nucleus	32.47	28.82
EES15409	Sorghum	nucleus	32.31	28.67
Zm00001d052888_P004	Maize	nucleus	31.82	28.2
TraesCS7A01G245200.1	Wheat	nucleus	31.82	28.16
TraesCS7D01G243800.1	Wheat	nucleus	31.66	28.02
HORVU7Hr1G050300.3	Barley	nucleus	31.49	27.95
TraesCS7B01G146300.1	Wheat	nucleus	31.49	27.87
Zm00001d003329_P003	Maize	nucleus	34.42	25.98
Bra035725.1-P	Field mustard	nucleus	9.25	25.11
Bra024372.1-P	Field mustard	nucleus	8.93	25.0
Bra022536.1-P	Field mustard	nucleus	9.25	24.68
Bra029187.1-P	Field mustard	nucleus	8.93	24.44
Bra031905.1-P	Field mustard	mitochondrion, nucleus, plasma membrane	3.73	22.55

Protein Annotations

Gene3D:1.20.1390.10	Gene3D:3.30.70.330	MapMan:35.2	EnsemblPlantsGene:Bra038740	EnsemblPlants:Bra038740.1	EnsemblPlants:Bra038740.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677
UniProt:M4FCC2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275
InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254522C
SEG:seg	:	:	:	:	:

Description

AT3G12640 (E=3e-193) | RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA01:-:26365156..26367950

Molecular Weight (calculated)

67908.3 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.779

Length

616 amino acids

Sequence
(BLAST)

001: MGSSDGDDRT FNGDFSEEGV VKLKERVKVK LKEYMGDYTD DILVEYVIVL LKNGRRREEA KNELKIFLAD DSDSFVAWLW DHLAESMDEY FTSSHVEKTT
101: VRSSLVSSLN EDKALVQMDS ESEKGRAPSR RSRQWRTQPN ATDVPPLLSS EVHKVHNYEK EDHRERHGKL SPSPKTHSHR KRSKTDSSRN EQREAKPVVS
201: SRLLQFAMRD ALGTSKPTEP SLKRLRSVVS ASTQDSSEPD PPRKTRSVAK TVNPMATVVK AVAEAAEGAK NPKAGRSVFD RISHSAGFPE TSNQRMILGE
301: VPPKNEERSV DQETVDNNGV YVENMTTFDT GLQPSRLGSS VNGSYSSSSL GNRINNPKSL QRRLVDDPNR VKGTDYQNHF TEVATKQKNG GFSGNADTGK
401: TVKLEEQMKV PGVGLQRYTS SEAITESSTV KPAAIAKEDS LIKKPVPGTL STSRPLEDAK SRTIFVANVH FGATKDSLSR HFNKFGEVLK AVIVIDPATG
501: QPSGSAYIEF TRKESAESAL SLDGTSFMSR ILKIVKGSNE QQQEAASSMS WSRAGRYARA SSPYRRGIPG GAFRGRSVVR GGARSMQWKR DSAETGTNSV
601: AAAPSTRSMT YVRTDS

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.