Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05837 | Canola | nucleus | 100.0 | 100.0 |
| Bra029187.1-P | Field mustard | nucleus | 91.19 | 92.0 |
| Bra022536.1-P | Field mustard | nucleus | 88.11 | 86.58 |
| AT5G51120.2 | Thale cress | nucleus | 88.99 | 76.23 |
| KRH34559 | Soybean | nucleus | 68.28 | 72.43 |
| KRG92240 | Soybean | nucleus | 67.84 | 71.96 |
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 33.48 | 71.7 |
| Solyc03g094080.2.1 | Tomato | nucleus | 49.34 | 70.44 |
| Bra024372.1-P | Field mustard | nucleus | 64.32 | 66.36 |
| Solyc03g094040.2.1 | Tomato | mitochondrion | 42.29 | 62.75 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 24.23 | 53.92 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 45.37 | 50.24 |
| KXG38899 | Sorghum | nucleus | 42.29 | 50.0 |
| TraesCS1A01G216200.1 | Wheat | nucleus | 45.37 | 50.0 |
| HORVU1Hr1G055400.2 | Barley | cytosol, golgi, nucleus | 42.73 | 41.81 |
| Solyc03g094060.2.1 | Tomato | cytosol | 41.85 | 32.2 |
| Bra001462.1-P | Field mustard | nucleus | 26.87 | 9.71 |
| Bra038740.1-P | Field mustard | nucleus | 25.11 | 9.25 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | EnsemblPlantsGene:Bra035725 | EnsemblPlants:Bra035725.1 | EnsemblPlants:Bra035725.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M4F3S5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF4 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002543E2B | SEG:seg |
Description
AT5G51120 (E=2e-068) PABN1, ATPABN1 | PABN1 (POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding / protein binding
Coordinates
chrA04:-:12513395..12514891
Molecular Weight (calculated)
25744.0 Da
IEP (calculated)
4.446
GRAVY (calculated)
-0.891
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLSDEQEHE VYGGDIPEEE EGEMETDEYE EYVGEEGAAA GGDEELEPGS ASRDLEDMKK RIKEIEEEAG ALREMQAKAE KDMGAGQDPS NAISSAEKEE
101: VDSRSIYVGN VDYACTPEEV QQHFQSCGTV NRVTILTDKF GQPKGFAYVE FVEADAVQNS LILNESELHG RQIKVSAKRT NVPGMRQFRG RRPFRPMRGF
201: MAAPMYYPPY AYGRVPRFRR PMRYRPY
101: VDSRSIYVGN VDYACTPEEV QQHFQSCGTV NRVTILTDKF GQPKGFAYVE FVEADAVQNS LILNESELHG RQIKVSAKRT NVPGMRQFRG RRPFRPMRGF
201: MAAPMYYPPY AYGRVPRFRR PMRYRPY
001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY
Arabidopsis Description
PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.