Factsheet for TraesCS1D01G218400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G216200.1	Wheat	nucleus	93.66	93.2
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	76.1	67.24
PGSC0003DMT400021468	Potato	cytosol, nucleus	31.71	61.32
Solyc03g094080.2.1	Tomato	nucleus	46.34	59.75
KXG38899	Sorghum	nucleus	54.15	57.81
Solyc03g094040.2.1	Tomato	mitochondrion	40.98	54.9
Bra029187.1-P	Field mustard	nucleus	51.22	46.67
CDY32641	Canola	nucleus	51.22	46.67
CDY38851	Canola	nucleus	51.22	46.67
TraesCS6D01G295600.1	Wheat	nucleus	50.24	46.4
Bra022536.1-P	Field mustard	nucleus	52.2	46.32
CDX91567	Canola	nucleus	51.22	46.05
KRH34559	Soybean	nucleus	47.8	45.79
KRG92240	Soybean	nucleus	47.8	45.79
CDY16338	Canola	nucleus	51.22	45.45
CDY05837	Canola	nucleus	50.24	45.37
Bra035725.1-P	Field mustard	nucleus	50.24	45.37
CDX71690	Canola	nucleus	49.27	44.49
AT5G51120.2	Thale cress	nucleus	50.73	39.25
TraesCS7D01G179700.1	Wheat	nucleus	42.93	38.26
Solyc03g094060.2.1	Tomato	cytosol	40.49	28.14
TraesCS2D01G332600.2	Wheat	nucleus	27.32	8.09
TraesCS7D01G243800.1	Wheat	nucleus	23.9	7.04
TraesCS2D01G271900.2	Wheat	nucleus	20.49	6.52

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008143	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS1D01G218400	EnsemblPlants:TraesCS1D01G218400.1	TIGR:cd12306	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:305223951..305227891

Molecular Weight (calculated)

22777.5 Da

IEP (calculated)

5.668

GRAVY (calculated)

-0.717

Length

205 amino acids

Sequence
(BLAST)

001: MASGNRALPI ENGEVLPAAG GNGEGGNGGS GDGFNRNRSS VDQQIDDMRR RLRELEETER EMLAVAAAAS HEDPAAAATA LEKAEVDACS IYVGNVDYGC
101: LPEEVQEHFQ DCGTVNRVTI LTDFYGNPKG YAYVEFHEAE AVQNALQLND TELHGRPLKV CPKRTNVPGM SYHRGRRPFQ PYYPPYPAFG RSPRFRRSPR
201: FYPYY

Best Arabidopsis Sequence Match ( AT5G10350.1 )
(BLAST)

001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ

Arabidopsis Description

PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.