CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05837	Canola	nucleus	96.92	96.92
CDY38851	Canola	nucleus	90.31	91.11
CDY32641	Canola	nucleus	90.31	91.11
CDX91567	Canola	nucleus	87.67	87.28
CDY16338	Canola	nucleus	87.67	86.15
AT5G51120.2	Thale cress	nucleus	87.22	74.72
CDY37814	Canola	nucleus	49.78	72.44
PGSC0003DMT400021468	Potato	cytosol, nucleus	33.48	71.7
KRH34559	Soybean	nucleus	66.52	70.56
KRG92240	Soybean	nucleus	66.08	70.09
Solyc03g094080.2.1	Tomato	nucleus	48.46	69.18
CDY33970	Canola	nucleus	62.56	67.3
CDY55162	Canola	nucleus	64.32	66.36
CDY08805	Canola	nucleus, plasma membrane	63.88	65.91
Solyc03g094040.2.1	Tomato	mitochondrion	41.85	62.09
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	24.23	53.92
CDY33952	Canola	cytosol, golgi, nucleus	50.22	53.77
TraesCS1D01G218400.1	Wheat	nucleus	44.49	49.27
TraesCS1A01G216200.1	Wheat	nucleus	44.49	49.03
KXG38899	Sorghum	nucleus	40.97	48.44
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	41.85	40.95
Solyc03g094060.2.1	Tomato	cytosol	41.41	31.86
CDX73810	Canola	nucleus	27.31	10.2
CDY00789	Canola	nucleus	26.43	10.0
CDY52667	Canola	nucleus	25.55	9.67
CDY50537	Canola	nucleus	25.55	9.54

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	GO:A0A078C4D3	EnsemblPlants:CDX71690	ProteinID:CDX71690	ProteinID:CDX71690.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00152369001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE8BFB	SEG:seg

Description

BnaC09g27310D

Coordinates

chrLK031794:+:3056047..3057845

Molecular Weight (calculated)

25690.0 Da

IEP (calculated)

4.761

GRAVY (calculated)

-0.890

Length

227 amino acids

Sequence
(BLAST)

001: MTLNDEQEHE VYGGDIPEEE EGEMETDEYE EYVGEEGAAA GGDEKLKPGS ASRDLEDMKK RIKEIEEEAG ALREMQAKAE KDMGAGQDPS SAISSAEKEE
101: VDSRSIHVGN VDYACTPEEV QQHFQSCGTV NRVTILTDKF GQPKGFAYVE FVEADAVQNS LILNESELHG RKIKVSAKRT NVPGMRQFRG RRPFRPMRGF
201: MAAPMYYAPY AYGRVPRFRR PMRYRPY

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.