Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029187.1-P | Field mustard | nucleus | 76.98 | 90.67 |
| CDY32641 | Canola | nucleus | 76.98 | 90.67 |
| CDY38851 | Canola | nucleus | 76.98 | 90.67 |
| Bra035725.1-P | Field mustard | nucleus | 76.23 | 88.99 |
| CDY05837 | Canola | nucleus | 76.23 | 88.99 |
| CDX91567 | Canola | nucleus | 75.47 | 87.72 |
| CDX71690 | Canola | nucleus | 74.72 | 87.22 |
| CDY16338 | Canola | nucleus | 75.09 | 86.15 |
| Bra022536.1-P | Field mustard | nucleus | 74.72 | 85.71 |
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 30.19 | 75.47 |
| Solyc03g094080.2.1 | Tomato | nucleus | 43.77 | 72.96 |
| KRG92240 | Soybean | nucleus | 58.87 | 72.9 |
| KRH34559 | Soybean | nucleus | 58.87 | 72.9 |
| AT5G65260.1 | Thale cress | nucleus | 55.47 | 66.82 |
| AT5G10350.1 | Thale cress | nucleus | 53.21 | 64.98 |
| Solyc03g094040.2.1 | Tomato | mitochondrion | 37.36 | 64.71 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 39.25 | 50.73 |
| KXG38899 | Sorghum | nucleus | 36.6 | 50.52 |
| TraesCS1A01G216200.1 | Wheat | nucleus | 38.49 | 49.51 |
| HORVU1Hr1G055400.2 | Barley | cytosol, golgi, nucleus | 36.6 | 41.81 |
| Solyc03g094060.2.1 | Tomato | cytosol | 36.98 | 33.22 |
| AT3G12640.3 | Thale cress | nucleus | 22.64 | 9.06 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | EntrezGene:835186 | ProteinID:AED96039.1 | ArrayExpress:AT5G51120 | EnsemblPlantsGene:AT5G51120 |
| RefSeq:AT5G51120 | TAIR:AT5G51120 | RefSeq:AT5G51120-TAIR-G | EnsemblPlants:AT5G51120.2 | TAIR:AT5G51120.2 | Unigene:At.24603 |
| ncoils:Coil | UniProt:F4KBV3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008143 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_001190511.1 | InterPro:Nucleotide-bd_a/b_plait_sf | Symbol:PABN1 | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix |
| UniParc:UPI0001E9319F | SEG:seg | : | : | : | : |
Description
PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
Coordinates
chr5:+:20779661..20781557
Molecular Weight (calculated)
30303.8 Da
IEP (calculated)
4.524
GRAVY (calculated)
-0.662
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQGLKL VLLIMILLWV
101: YILESFSESM NLSRNLLEFE YEKEIINSGV SAAEKEEVDS RSIYVGNVDY ACTPEEVQQH FQSCGTVNRV TILTDKFGQP KGFAYVEFVE VEAVQNSLIL
201: NESELHGRQI KVSAKRTNVP GMRQFRGRGR PFRPMRGFMP GVPFYPPYAY GRVPRFRRPM RYRPY
101: YILESFSESM NLSRNLLEFE YEKEIINSGV SAAEKEEVDS RSIYVGNVDY ACTPEEVQQH FQSCGTVNRV TILTDKFGQP KGFAYVEFVE VEAVQNSLIL
201: NESELHGRQI KVSAKRTNVP GMRQFRGRGR PFRPMRGFMP GVPFYPPYAY GRVPRFRRPM RYRPY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.