Factsheet for HORVU1Hr1G055400.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	golgi, nucleus
MultiLoc:	nucleus
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G218400.1	Wheat	nucleus	67.24	76.1
TraesCS1A01G216200.1	Wheat	nucleus	66.38	74.76
PGSC0003DMT400021468	Potato	cytosol, nucleus	27.16	59.43
Solyc03g094080.2.1	Tomato	nucleus	38.79	56.6
KXG38899	Sorghum	nucleus	46.12	55.73
Solyc03g094040.2.1	Tomato	mitochondrion	35.78	54.25
HORVU6Hr1G077700.12	Barley	nucleus	43.53	46.54
Bra022536.1-P	Field mustard	nucleus	44.4	44.59
KRG92240	Soybean	nucleus	40.95	44.39
KRH34559	Soybean	nucleus	40.95	44.39
CDY32641	Canola	nucleus	42.67	44.0
CDY38851	Canola	nucleus	42.67	44.0
Bra029187.1-P	Field mustard	nucleus	42.67	44.0
CDX91567	Canola	nucleus	43.1	43.86
CDY16338	Canola	nucleus	43.53	43.72
CDY05837	Canola	nucleus	41.81	42.73
Bra035725.1-P	Field mustard	nucleus	41.81	42.73
CDX71690	Canola	nucleus	40.95	41.85
AT5G51120.2	Thale cress	nucleus	41.81	36.6
Solyc03g094060.2.1	Tomato	cytosol	34.05	26.78
HORVU2Hr1G081930.1	Barley	nucleus	22.84	7.66
HORVU7Hr1G050300.3	Barley	nucleus	21.12	7.06
HORVU2Hr1G066510.2	Barley	mitochondrion	18.53	6.29

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	UniProt:A0A287FPG2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008143	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU1Hr1G055400
EnsemblPlants:HORVU1Hr1G055400.2	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TMHMM:TMhelix	UniParc:UPI000B4651D7	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:406200335..406204197

Molecular Weight (calculated)

25935.4 Da

IEP (calculated)

4.802

GRAVY (calculated)

-0.603

Length

232 amino acids

Sequence
(BLAST)

001: MASGNRALPI EDGEVLRSPG DNGGGGDGGN GNGFNLSAME QEIDDMRRRL RKLQETEREL LPVAAAAASS QEDPTAAATA LEKAEVDARS IYVGNVDYEC
101: LPEEVQEHFQ DCGTVNRVTI LTDIHGHPKG YAYVEFLEPE AVENALQLND TELHDRRLKV CPKRTNVPGM SYNRGRRPFQ PYYPPYPTFG EGTKVQEVTQ
201: VLPLLLILPG CCDFSFFLAN FHDTYRRYRQ RP

Best Arabidopsis Sequence Match ( AT5G10350.1 )
(BLAST)

001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ

Arabidopsis Description

PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.