Factsheet for TraesCS1A01G216200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G218400.1	Wheat	nucleus	93.2	93.66
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	74.76	66.38
PGSC0003DMT400021468	Potato	cytosol, nucleus	30.58	59.43
Solyc03g094080.2.1	Tomato	nucleus	45.63	59.12
KXG38899	Sorghum	nucleus	52.43	56.25
Solyc03g094040.2.1	Tomato	mitochondrion	40.29	54.25
TraesCS6A01G316300.1	Wheat	nucleus	49.03	48.1
Bra029187.1-P	Field mustard	nucleus	50.49	46.22
CDY32641	Canola	nucleus	50.49	46.22
CDY38851	Canola	nucleus	50.49	46.22
Bra022536.1-P	Field mustard	nucleus	51.46	45.89
CDX91567	Canola	nucleus	50.49	45.61
Bra035725.1-P	Field mustard	nucleus	50.0	45.37
CDY05837	Canola	nucleus	50.0	45.37
KRH34559	Soybean	nucleus	47.09	45.33
KRG92240	Soybean	nucleus	47.09	45.33
CDY16338	Canola	nucleus	50.49	45.02
CDX71690	Canola	nucleus	49.03	44.49
AT5G51120.2	Thale cress	nucleus	49.51	38.49
TraesCS7A01G177900.1	Wheat	nucleus	42.23	37.83
Solyc03g094060.2.1	Tomato	cytosol	39.81	27.8
TraesCS2A01G330100.3	Wheat	nucleus	26.21	7.86
TraesCS7A01G245200.1	Wheat	nucleus	24.27	7.18
TraesCS2A01G272600.1	Wheat	nucleus	20.87	6.66

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008143	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS1A01G216200	EnsemblPlants:TraesCS1A01G216200.1	TIGR:cd12306	SEG:seg	:

Description

No Description!

Coordinates

chr1A:+:382247320..382251280

Molecular Weight (calculated)

22699.4 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.724

Length

206 amino acids

Sequence
(BLAST)

001: MASGNRAIPI ENGEVLPAAG GNGEGGNGGS GDGFNRNRSS VDQQIDDMRR RLRELEETER EMLAVAAAAA SHDDPAAAAT ALEKAEVDAR SIYVGNVDYG
101: CLPEEVQEHF QDCGTVNRVT ILTDFYGNPK GYAYVEFQEA QSVQNALRLN DTELHGRPLK VCPKRTNVPG MSHHRGRRPF QPYYPPCPAF GRSPRFRRSP
201: RFCPYS

Best Arabidopsis Sequence Match ( AT5G10350.1 )
(BLAST)

001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ

Arabidopsis Description

PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.