Factsheet for Bra001462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73810	Canola	nucleus	94.27	97.37
Bra038740.1-P	Field mustard	nucleus	77.23	78.73
AT3G12640.3	Thale cress	nucleus	78.18	74.17
VIT_06s0009g02150.t01	Wine grape	cytosol	8.44	60.23
KRH66489	Soybean	mitochondrion	11.94	49.02
KRH13922	Soybean	nucleus	42.36	39.47
KRH43491	Soybean	nucleus	42.68	39.35
Solyc01g086980.2.1	Tomato	nucleus	41.24	38.6
Os04t0472400-00	Rice	mitochondrion	5.25	34.74
HORVU2Hr1G081930.1	Barley	nucleus	36.62	33.24
TraesCS2A01G330100.3	Wheat	nucleus	36.31	33.19
TraesCS2B01G352200.2	Wheat	nucleus	35.99	32.99
TraesCS2D01G332600.2	Wheat	nucleus	36.15	32.8
KXG26527	Sorghum	nucleus	35.51	31.36
GSMUA_Achr9P16060_001	Banana	golgi	34.87	30.8
Zm00001d025673_P005	Maize	nucleus	34.55	30.74
Os08t0504600-01	Rice	nucleus	32.17	29.53
EES15409	Sorghum	nucleus	32.48	29.39
Zm00001d031422_P006	Maize	nucleus	31.85	28.82
Zm00001d052888_P004	Maize	nucleus	31.69	28.63
TraesCS7A01G245200.1	Wheat	nucleus	31.05	28.02
TraesCS7B01G146300.1	Wheat	nucleus	30.73	27.73
TraesCS7D01G243800.1	Wheat	nucleus	30.73	27.73
HORVU7Hr1G050300.3	Barley	nucleus	30.41	27.52
Bra024372.1-P	Field mustard	nucleus	9.55	27.27
Bra022536.1-P	Field mustard	nucleus	10.03	27.27
Bra035725.1-P	Field mustard	nucleus	9.71	26.87
Zm00001d003329_P003	Maize	nucleus	34.39	26.47
Bra029187.1-P	Field mustard	nucleus	9.39	26.22
Bra031905.1-P	Field mustard	mitochondrion, nucleus, plasma membrane	3.98	24.51

Protein Annotations

Gene3D:1.20.1390.10	Gene3D:3.30.70.330	MapMan:35.2	EnsemblPlantsGene:Bra001462	EnsemblPlants:Bra001462.1	EnsemblPlants:Bra001462.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677
UniProt:M4CB82	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275
InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002540802
SEG:seg	:	:	:	:	:

Description

AT3G12640 (E=4e-103) | RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA03:+:16479385..16482376

Molecular Weight (calculated)

69154.7 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.794

Length

628 amino acids

Sequence
(BLAST)

001: MGSADPVDDR TFNGGFSEEG VAKLKERVKV KLKEYMGDYT DDILVEYVIV LLKNGRRKEE AKNELKIFLA DDSDSFVAWL WDHLGESMDE YFTISIQNED
101: TAVLQMESES EKGRSGARRG RGWRSQLTNA PDVPPLLSSE VHKIHSYEKR EHRDRHGKRS PSPQSQSRRK RSKTDSSRSE QMEAKPNVSS RLLQFAMRDA
201: LAISKPAEPS LKRLRSVVSA STQDSSDPNP AQKIRSAARV VNPMATVIKA VAEAAEDAKN PKSGRSVFDR ISHSAGFSEA LDQHMVLGDV SPKNEERRNQ
301: EPVQHQYTQR ADDNGMHVEN MATFDTGLQP NFSSDRSRLG SDVNVSHPSS FVGNRINNPR SLQDRLVDDP RRVKGTNYQN HLNEVATKQK AARFSGNAGT
401: GKTVKLEEQM KVPDVGLQRY MDRGGVVSSE ATTGSGNVRS AANAKEDTAT KKSVPGTLST TRPLEDVSSR TIFVANVHFG ATKDSLSRHF NKCGEVLKAV
501: IVTDPATGQP SGSAYIEFTR KEAADNALSL DGTSFMSRIL KIVKGSNGQQ QQEAASWARA GRYARASPYR RGIPGGAFRG RPVVRAGGAR SMQWKRDSAE
601: TGNNIAAPNP RSMTYVRTES QSDGHATV

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.