Factsheet for Zm00001d025673_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 24677780
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26527	Sorghum	nucleus	86.83	86.22
Zm00001d003329_P003	Maize	nucleus	84.7	73.28
TraesCS2B01G352200.2	Wheat	nucleus	63.03	64.96
TraesCS2A01G330100.3	Wheat	nucleus	63.03	64.77
TraesCS2D01G332600.2	Wheat	nucleus	63.17	64.45
HORVU2Hr1G081930.1	Barley	nucleus	63.03	64.31
Os04t0472400-00	Rice	mitochondrion	7.93	58.95
VIT_06s0009g02150.t01	Wine grape	cytosol	6.23	50.0
KRH66489	Soybean	mitochondrion	10.06	46.41
VIT_10s0042g00630.t01	Wine grape	cytosol	2.83	44.44
VIT_05s0029g00530.t01	Wine grape	plastid	2.83	44.44
VIT_13s0064g01190.t01	Wine grape	nucleus	39.66	40.0
GSMUA_Achr9P16060_001	Banana	golgi	38.24	37.97
Solyc01g086980.2.1	Tomato	nucleus	34.99	36.81
CDY52667	Canola	nucleus	30.88	36.33
CDY50537	Canola	nucleus	30.74	35.69
CDY00789	Canola	nucleus	30.17	35.5
KRH43491	Soybean	nucleus	34.14	35.39
Bra038740.1-P	Field mustard	nucleus	30.59	35.06
AT3G12640.3	Thale cress	nucleus	32.72	34.89
KRH13922	Soybean	nucleus	33.29	34.87
Bra001462.1-P	Field mustard	nucleus	30.74	34.55
CDX73810	Canola	nucleus	29.75	34.54
Zm00001d031422_P006	Maize	nucleus	33.43	34.01
Zm00001d052888_P004	Maize	nucleus	32.01	32.52
Zm00001d037200_P004	Maize	extracellular, nucleus	8.07	28.08
Zm00001d044869_P001	Maize	nucleus	8.92	23.08
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	3.26	22.33
Zm00001d052198_P002	Maize	nucleus	8.07	21.43
Zm00001d018112_P004	Maize	nucleus	8.5	21.05

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	ProteinID:AQK44227.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:IPR000504	InterPro:IPR002483	InterPro:IPR012677	UniProt:K7TU34	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF01480	PFscan:PS50102	PANTHER:PTHR45275	InterPro:PWI_dom	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002215617	EnsemblPlantsGene:Zm00001d025673	EnsemblPlants:Zm00001d025673_P005	EnsemblPlants:Zm00001d025673_T005
SEG:seg	:	:	:	:	:

Description

RNA binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr10:+:125893015..125901899

Molecular Weight (calculated)

77426.5 Da

IEP (calculated)

10.236

GRAVY (calculated)

-0.707

Length

706 amino acids

Sequence
(BLAST)

001: MDGGEDRTFK ANFTGEGVTM LQDRVKEKLR ELMGDYSDDT LAEYVVVLLR NGRRKDEAAK ELQVFLGDDN DAFVSWLWDH LSSNLHLYVH AKSASSKDDV
101: KSTHSAARGL PVHSVTSSMQ VNHEPEAETQ KTVVTHKKRD WGHQKRDWGT IDRGQSEAVP LRSVVANVSH VDEKDFHKSH ADEKAFHKSH SLRRTRSPDM
201: HNHRKRSREA DVQSTKRSSH PVVSAPRRLL QFAVRDAVRT VQPVTSSSES DSKRIRSVVS TLASDSTLDI THIRLQKTNS DLRVPGATAA LRAAAEAAGD
301: ALKDSFSRSV FSRLGRMPTI NSTEQSPYHR EQDLKGKEYG NIDNIQAENQ VEFDERNQHG GSDVYMRDQR TEEATGFIPN IDEYDQNSAV RSNGLGSRQS
401: ALPASGGKES LVLGYVRGAS EIRSRRLIAQ GPHAGSGPRP SEKTQNVSGN TNMQKLPIHV TGDAVAFDHQ VPMEKVADAR KSHVKTAQAN DVSMMTDKSK
501: DLIQPSSMLQ AQKASGAAGS NTTGQPEGGP DSRTVFVSNV HFGSSKDALS RHFNKFGAVL KTHIVTDGVT GQSTGSAYIE FLHKESAEQA LTLNGTSFMS
601: RILKVVRKSS TEVTQLPVLP RASWGSPFAS RLIRTAYPRP NYPGAIRGRL SLRGAARSLQ WKRGVADSGD VGKPSPTAPG NQLVTPATRN FTYTRTEPKT
701: NAGAMA

Best Arabidopsis Sequence Match ( AT3G12640.3 )
(BLAST)

001: MGSADLVDDR TFNGDFSVEG VAKLKEMVKD KLKEYMGDYT DDILVEYVIV LLRNGRRKEE ANNELKIFLG DDSDSFVAWL WDHLAESVDE YFSSNVEGTT
101: IKSSLISSHE DKALVPLDSE YDKGRSDKSN GARRGRQWRS QPTNVSEIPP LLSSEVHKIH NYEKKDHKHR HNKRSPSPQA QSQRKRSRTD DSRNEQREAK
201: PDVSRRLLQF AVRDALAISR PANSSTESSL KRLRSVVSTS TQNSSDPDPA RKIRSVARVV NPMATVMKAV AEAAEDAKKP KSGRSVFDRI SHSTGSETLD
301: QNMVLGEVSP KDEESRNFSQ GQEAVQLQYT QSLANNGVYF ENMTTNDTGL NPDFSSDRGR LGSSVNVSHP STYLGNRINN PNSLQHRLVD DSKRVKGTNY
401: QNRLPEVATK HKTASFSGNI DTGKTVKLEE QRKIPDVGLQ RYMDEGRLVS SEATTQLSTQ KILGDTIGNG NVKPAASVKE ESTTNKSVPG TLSTTRPLED
501: ASSRTIFVAN VHFGATKDSL SRHFNKFGEV LKAFIVTDPA TGQPSGSAYI EFTRKEAAEN ALSLDGTSFM SRILKIVKGS NGQNQEAASS MSWSRGGRFT
601: RAPSYFRGGA VRGRSVVRGG GRSMQWKRDS ADTGNNNNVA PNNARSLTYV RAESKSDGVA ND

Arabidopsis Description

RNA binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LTX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.