Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P22250_001 | Banana | nucleus | 89.81 | 89.81 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 87.5 | 87.5 |
| CDY37814 | Canola | nucleus | 58.8 | 81.41 |
| KRH59303 | Soybean | nucleus | 80.09 | 80.47 |
| CDY33970 | Canola | nucleus | 77.31 | 79.15 |
| AT5G65260.1 | Thale cress | nucleus | 80.09 | 78.64 |
| AT5G10350.1 | Thale cress | nucleus | 78.7 | 78.34 |
| Bra024372.1-P | Field mustard | nucleus | 79.63 | 78.18 |
| CDY08805 | Canola | nucleus, plasma membrane | 79.63 | 78.18 |
| KRH43152 | Soybean | nucleus | 78.7 | 77.98 |
| CDY55162 | Canola | nucleus | 79.17 | 77.73 |
| EER88092 | Sorghum | nucleus | 72.69 | 77.34 |
| PGSC0003DMT400043273 | Potato | nucleus | 77.31 | 77.31 |
| KXG30711 | Sorghum | nucleus | 75.46 | 76.89 |
| Solyc11g009090.1.1 | Tomato | nucleus | 77.78 | 76.71 |
| PGSC0003DMT400041675 | Potato | nucleus | 77.31 | 76.61 |
| Os02t0757900-02 | Rice | nucleus | 76.39 | 76.39 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 71.76 | 76.35 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 73.61 | 75.71 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 72.69 | 75.12 |
| Os06t0219600-01 | Rice | nucleus | 70.37 | 74.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 70.83 | 73.56 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 73.61 | 73.27 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 33.33 | 70.59 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 33.33 | 70.59 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 75.0 | 65.85 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 37.04 | 65.57 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 66.67 | 64.86 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 63.43 | 64.62 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 68.52 | 64.35 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 68.52 | 64.35 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 30.09 | 63.11 |
| Zm00001d052198_P002 | Maize | nucleus | 75.0 | 60.9 |
| Zm00001d018112_P004 | Maize | nucleus | 75.93 | 57.54 |
| Zm00001d044869_P001 | Maize | nucleus | 70.37 | 55.68 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 22.69 | 51.04 |
| Solyc03g094090.2.1 | Tomato | nucleus | 24.07 | 49.52 |
| GSMUA_Achr4P09640_001 | Banana | plastid | 16.2 | 11.99 |
| GSMUA_Achr9P16060_001 | Banana | golgi | 27.31 | 8.3 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr6G10340_001 | EnsemblPlants:GSMUA_Achr6P10340_001 | EnsemblPlants:GSMUA_Achr6T10340_001 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M0T5T3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000296483D | SEG:seg |
Description
Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10340_001]
Coordinates
chr6:+:6910527..6918246
Molecular Weight (calculated)
24715.1 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.783
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEHEVYG GEIPDEADMD ADVDIGRSDE DAAKLQELDE MKKRLKEMEE EAAALREIQA KVEKEMGAAQ DPAGSAATQA SKEEVDARSV FVGNVDYACT
101: PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFLELEA VQDALQLNES ELHGRQIKVA AKRTNVPGMK QFHPRRFNPY MGYPYRRPYM PPYFASPYGF
201: GKVPRFRRPM RFRPYY
101: PEEVQQHFQS CGTVNRVTIL TDKFGQPKGF AYVEFLELEA VQDALQLNES ELHGRQIKVA AKRTNVPGMK QFHPRRFNPY MGYPYRRPYM PPYFASPYGF
201: GKVPRFRRPM RFRPYY
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.