Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75125 | Soybean | nucleus | 20.15 | 86.89 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 60.08 | 63.71 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 57.79 | 61.79 |
| CDY19977 | Canola | nucleus | 23.95 | 61.76 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 56.27 | 61.16 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 57.79 | 60.8 |
| GSMUA_Achr10P... | Banana | nucleus | 65.78 | 60.7 |
| Bra004361.1-P | Field mustard | nucleus | 42.59 | 59.26 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 52.09 | 56.85 |
| Bra025411.1-P | Field mustard | nucleus | 36.88 | 55.11 |
| Solyc03g114830.2.1 | Tomato | nucleus | 51.71 | 55.06 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 50.19 | 54.32 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 50.95 | 54.25 |
| KRH07467 | Soybean | nucleus | 48.29 | 53.81 |
| CDY34564 | Canola | nucleus | 44.49 | 53.67 |
| PGSC0003DMT400063313 | Potato | nucleus | 50.57 | 53.63 |
| CDY36077 | Canola | nucleus | 44.87 | 53.39 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 46.39 | 53.04 |
| KRH45412 | Soybean | nucleus | 47.53 | 52.97 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 46.77 | 52.34 |
| Solyc06g069430.2.1 | Tomato | nucleus | 48.67 | 52.24 |
| EER97510 | Sorghum | nucleus | 50.19 | 52.17 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 48.29 | 51.84 |
| PGSC0003DMT400010451 | Potato | nucleus | 49.05 | 51.6 |
| CDY02185 | Canola | nucleus | 47.15 | 51.45 |
| KRH54740 | Soybean | nucleus | 47.53 | 51.23 |
| Bra012997.1-P | Field mustard | nucleus | 46.77 | 51.04 |
| AT5G60910.1 | Thale cress | nucleus | 46.77 | 50.83 |
| Zm00001d022088_P004 | Maize | nucleus | 49.81 | 50.78 |
| KRH03173 | Soybean | nucleus | 46.01 | 50.63 |
| CDY58690 | Canola | nucleus | 46.39 | 50.62 |
| KRH70974 | Soybean | nucleus | 46.77 | 50.62 |
| Os07t0605200-01 | Rice | nucleus | 47.91 | 50.6 |
| Bra029347.1-P | Field mustard | nucleus | 46.01 | 50.42 |
| CDY42841 | Canola | nucleus | 46.01 | 50.42 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 46.39 | 50.41 |
| KRH63171 | Soybean | nucleus | 46.77 | 50.41 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 46.01 | 50.0 |
| Bra035952.1-P | Field mustard | nucleus | 45.63 | 49.79 |
| CDY16832 | Canola | nucleus | 45.63 | 49.79 |
| CDY47002 | Canola | nucleus | 45.25 | 49.38 |
| Solyc02g089210.2.1 | Tomato | nucleus | 46.77 | 49.2 |
| KRH56774 | Soybean | nucleus | 45.63 | 49.18 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 45.25 | 48.97 |
| CDY65811 | Canola | nucleus | 47.53 | 48.83 |
| Bra038326.1-P | Field mustard | nucleus | 47.53 | 48.83 |
| CDX95960 | Canola | nucleus | 47.53 | 48.83 |
| CDY33554 | Canola | nucleus | 47.53 | 48.83 |
| Bra011021.1-P | Field mustard | nucleus | 46.77 | 48.43 |
| PGSC0003DMT400003485 | Potato | nucleus | 45.25 | 48.18 |
| GSMUA_Achr11P... | Banana | nucleus | 42.97 | 48.09 |
| AT1G69120.1 | Thale cress | nucleus | 46.39 | 47.66 |
| PGSC0003DMT400072888 | Potato | nucleus | 44.11 | 47.54 |
| Solyc05g056620.1.1 | Tomato | nucleus | 44.11 | 47.54 |
| KRH45099 | Soybean | nucleus | 44.49 | 47.18 |
| AT1G26310.1 | Thale cress | nucleus | 45.25 | 46.67 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 47.15 | 46.44 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 47.15 | 46.44 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 47.15 | 46.44 |
| KRG93701 | Soybean | nucleus | 42.97 | 46.31 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 42.21 | 46.25 |
| PGSC0003DMT400068325 | Potato | nucleus | 41.06 | 46.15 |
| Bra036201.1-P | Field mustard | nucleus | 43.35 | 45.97 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 42.59 | 45.9 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 41.83 | 45.83 |
| CDY00082 | Canola | nucleus | 42.97 | 45.56 |
| Solyc02g065730.1.1 | Tomato | nucleus | 40.3 | 45.3 |
| KRH01382 | Soybean | nucleus | 43.35 | 45.06 |
| CDY45899 | Canola | nucleus | 42.59 | 44.98 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 45.25 | 44.74 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 40.68 | 44.58 |
| AT3G30260.1 | Thale cress | nucleus | 42.21 | 44.58 |
| Bra004007.1-P | Field mustard | nucleus | 45.63 | 44.28 |
| KRH18331 | Soybean | nucleus | 41.06 | 44.26 |
| CDX86353 | Canola | nucleus | 41.83 | 44.18 |
| CDY04265 | Canola | nucleus | 46.39 | 44.04 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 39.54 | 43.33 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 36.88 | 42.92 |
| CDY07357 | Canola | nucleus | 46.77 | 42.56 |
| KXG23502 | Sorghum | nucleus | 35.36 | 41.7 |
| Os12t0501700-00 | Rice | nucleus | 36.5 | 41.2 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 36.88 | 40.76 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 27.0 | 40.57 |
| GSMUA_Achr10P... | Banana | nucleus | 17.49 | 38.98 |
| Zm00001d023736_P001 | Maize | nucleus | 36.5 | 37.35 |
| GSMUA_Achr10P... | Banana | nucleus | 31.94 | 35.9 |
| GSMUA_Achr10P... | Banana | nucleus | 30.8 | 35.37 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 22.05 | 35.37 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 31.56 | 35.17 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 31.94 | 35.15 |
| CDX85287 | Canola | nucleus | 24.33 | 34.22 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 30.04 | 33.47 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 30.8 | 33.2 |
| CDY35780 | Canola | nucleus | 24.71 | 32.99 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 29.28 | 32.77 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 30.04 | 32.24 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 28.52 | 31.78 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 33.46 | 30.99 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 29.66 | 30.71 |
| GSMUA_Achr10P... | Banana | nucleus | 29.66 | 24.45 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr3G02280_001 |
| EnsemblPlants:GSMUA_Achr3P02280_001 | EnsemblPlants:GSMUA_Achr3T02280_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0SB46 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002955B25 | SEG:seg | : | : |
Description
Agamous-like MADS-box protein AGL8 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G02280_001]
Coordinates
chr3:+:1493970..1500076
Molecular Weight (calculated)
30063.2 Da
IEP (calculated)
9.407
GRAVY (calculated)
-0.610
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVSLIIFSA EGKLYEYASN SCMEKILERY ERCCYAEKAI ACSDPGPQGN WYREYAKLKA
101: KFEVLHRSQR HLMGEQLDSL TVKELQQLEH QLETSMKQIR SRKTQIMLDF VAELQRKEKS LREQNKILEE ELMEKQKLMA PSHQAQRQQQ NQLPSSSSSP
201: SSFPIAGLIA ESNPILSIGT FRGRGSVDSE AAAQTQVRNT SSLLPPMDAW PSEWLTSMCN LKL
101: KFEVLHRSQR HLMGEQLDSL TVKELQQLEH QLETSMKQIR SRKTQIMLDF VAELQRKEKS LREQNKILEE ELMEKQKLMA PSHQAQRQQQ NQLPSSSSSP
201: SSFPIAGLIA ESNPILSIGT FRGRGSVDSE AAAQTQVRNT SSLLPPMDAW PSEWLTSMCN LKL
001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
Arabidopsis Description
CALTranscription factor CAULIFLOWER [Source:UniProtKB/Swiss-Prot;Acc:Q39081]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.