Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67669 | Canola | mitochondrion, nucleus | 15.64 | 57.56 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 56.16 | 55.97 |
| GSMUA_Achr2P20700_001 | Banana | plastid | 51.14 | 52.28 |
| GSMUA_Achr3P02850_001 | Banana | nucleus | 52.97 | 51.79 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 53.88 | 51.7 |
| Os11t0207000-01 | Rice | nucleus, plastid | 53.42 | 51.2 |
| Os11t0207100-01 | Rice | nucleus | 54.45 | 51.13 |
| KRH64564 | Soybean | nucleus, plastid | 53.08 | 51.04 |
| KRH15928 | Soybean | nucleus, plastid | 52.97 | 50.71 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 52.4 | 50.55 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 52.28 | 50.33 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 53.65 | 50.32 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 52.51 | 50.27 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 53.54 | 50.27 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 52.17 | 50.11 |
| HORVU4Hr1G017140.2 | Barley | plastid | 53.65 | 50.11 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 53.42 | 50.0 |
| KXG28056 | Sorghum | nucleus, plastid | 53.31 | 49.79 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 52.17 | 49.57 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 50.68 | 49.44 |
| Zm00001d023706_P002 | Maize | nucleus | 51.14 | 49.39 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 52.28 | 49.25 |
| KRH18102 | Soybean | plastid | 52.05 | 49.14 |
| KRH53367 | Soybean | nucleus | 53.54 | 48.8 |
| Zm00001d041803_P001 | Maize | nucleus | 50.57 | 48.36 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 46.23 | 48.33 |
| KXG23150 | Sorghum | nucleus | 50.91 | 48.11 |
| CDY14963 | Canola | nucleus, plastid | 40.18 | 47.7 |
| CDY40943 | Canola | nucleus, plastid | 41.55 | 47.03 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 39.73 | 46.9 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 40.75 | 46.12 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 44.52 | 44.72 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 42.69 | 42.65 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 41.78 | 38.12 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 11.99 | 36.97 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 23.97 | 30.04 |
| GSMUA_Achr10P... | Banana | nucleus | 25.57 | 28.9 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 25.8 | 28.0 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 25.23 | 27.83 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 8.68 | 26.57 |
| PGSC0003DMT400092079 | Potato | nucleus | 19.29 | 22.87 |
| CDY69476 | Canola | nucleus | 6.74 | 21.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P18610_001 | EnsemblPlants:GSMUA_Achr6T18610_001 | EnsemblPlantsGene:GSMUA_Achr6G18610_001 | InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 |
| PFAM:PF01803 | SEG:seg | UniParc:UPI000294E695 | UniProt:M0T859 | MapMan:35.1 | : |
Description
Putative Transcriptional corepressor SEUSS [Source:GMGC_GENE;Acc:GSMUA_Achr6G18610_001]
Coordinates
chr6:+:12842292..12850984
Molecular Weight (calculated)
95786.2 Da
IEP (calculated)
8.737
GRAVY (calculated)
-0.554
Length
876 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSGPPTPV GGGQSVPASL LRTNSAMSRG AQPGSLPSQQ PASPLVSPRT QFDNIGNGNG NNMNLLGNYT NISSLLNQST GNGVPVSVGG LSAASLGLQQ
101: RGGVGSAVEM LSSAELDPLS FTSASSLAQR QSLQNPSRNQ LAVDRSQNEH REGMHKFRRQ FSLPHIQQQM LRGGLGNMGP IAPVKLEPQM DPSDKTGPSQ
201: NLQTLCSSSA TKLEPQQLHS VRSLGPAKLE RQHSDTALVL QQQQHQLLQM SRPPSQAAAA AQMSLLQQQR MLQLQQQQQQ QILQTRPQQR NQLQQQLQQA
301: SIRPQIKPTL YEPGTCARRL TQYMYHQQHR PEDNNIKFWR KFVAEYFAPN ARKRWCVSLY GSGRQTTGVF PQDAWHCEVC NRKPGRGFET TFEVLPRLYQ
401: IKYASGTLEE LLYVDMPREY QNALGQIVLD YGKAIQESVY DQLRVVREGQ LRIVFSAELK ICSWEFCARQ HEELVPRRLL IPQVSQLGAA AQKYQNTAQN
501: SPPSISAQDL QNTCNSFVVS ARQLAKTLEV PLVNDLGYTK RYIRCLQISE VVNSMKDLID YSRETRTGPV DSLNSFPRKA SFGLHPQQTQ QAKDHQMVAQ
601: NSTHNDQSSS HVNSVQIAGC NGAMNVENSL GNLTATCTTT SISELLHQNS LNSRQGNLVS TTNDQSGGGS VVPIPSASSS NSLLPSQPNA SSPFPSQMPS
701: ALSGNNAPTS LNFVHLNSVP PPANMSMLQQ PPVQSHEANP TGSQSSVQKI LQEMMSSQLN GVGNLEDELK GLNGVTPALN GVDCLVRNGM ANNSGYGEMG
801: FSAMGMTDQS TTANGLRAVM ANDTMTMTGR VGMNHLSQYP HTMNHQQLQD MESRLLSGSG HVNGFDNLQF DWKSSP
101: RGGVGSAVEM LSSAELDPLS FTSASSLAQR QSLQNPSRNQ LAVDRSQNEH REGMHKFRRQ FSLPHIQQQM LRGGLGNMGP IAPVKLEPQM DPSDKTGPSQ
201: NLQTLCSSSA TKLEPQQLHS VRSLGPAKLE RQHSDTALVL QQQQHQLLQM SRPPSQAAAA AQMSLLQQQR MLQLQQQQQQ QILQTRPQQR NQLQQQLQQA
301: SIRPQIKPTL YEPGTCARRL TQYMYHQQHR PEDNNIKFWR KFVAEYFAPN ARKRWCVSLY GSGRQTTGVF PQDAWHCEVC NRKPGRGFET TFEVLPRLYQ
401: IKYASGTLEE LLYVDMPREY QNALGQIVLD YGKAIQESVY DQLRVVREGQ LRIVFSAELK ICSWEFCARQ HEELVPRRLL IPQVSQLGAA AQKYQNTAQN
501: SPPSISAQDL QNTCNSFVVS ARQLAKTLEV PLVNDLGYTK RYIRCLQISE VVNSMKDLID YSRETRTGPV DSLNSFPRKA SFGLHPQQTQ QAKDHQMVAQ
601: NSTHNDQSSS HVNSVQIAGC NGAMNVENSL GNLTATCTTT SISELLHQNS LNSRQGNLVS TTNDQSGGGS VVPIPSASSS NSLLPSQPNA SSPFPSQMPS
701: ALSGNNAPTS LNFVHLNSVP PPANMSMLQQ PPVQSHEANP TGSQSSVQKI LQEMMSSQLN GVGNLEDELK GLNGVTPALN GVDCLVRNGM ANNSGYGEMG
801: FSAMGMTDQS TTANGLRAVM ANDTMTMTGR VGMNHLSQYP HTMNHQQLQD MESRLLSGSG HVNGFDNLQF DWKSSP
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.