Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G43850.1 | KRH07467 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | KRH45412 | AT1G69120.1 | 16854969 |
| AT1G43850.1 | KRH70974 | AT1G69120.1 | 16854969 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64564 | Soybean | nucleus, plastid | 91.78 | 96.82 |
| KRH15928 | Soybean | nucleus, plastid | 77.42 | 81.31 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 75.23 | 79.19 |
| KRH18102 | Soybean | plastid | 68.26 | 70.69 |
| CDY67669 | Canola | mitochondrion, nucleus | 17.17 | 69.33 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 64.72 | 69.27 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 54.94 | 63.01 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 51.51 | 56.31 |
| CDY40943 | Canola | nucleus, plastid | 45.06 | 55.94 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 44.43 | 55.17 |
| GSMUA_Achr2P20700_001 | Banana | plastid | 48.07 | 53.91 |
| CDY14963 | Canola | nucleus, plastid | 41.21 | 53.66 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 48.8 | 53.54 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 41.31 | 53.5 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 48.18 | 52.79 |
| GSMUA_Achr3P02850_001 | Banana | nucleus | 48.49 | 52.01 |
| Os11t0207000-01 | Rice | nucleus, plastid | 48.91 | 51.42 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 48.39 | 51.21 |
| TraesCS4A01G211800.1 | Wheat | nucleus, plastid | 48.39 | 51.1 |
| Os11t0207100-01 | Rice | nucleus | 49.32 | 50.8 |
| TraesCS4B01G104300.1 | Wheat | nucleus, plastid | 47.87 | 50.44 |
| TraesCS4B01G104400.2 | Wheat | nucleus, plastid | 48.91 | 50.32 |
| HORVU4Hr1G017160.3 | Barley | nucleus, plastid | 48.18 | 50.22 |
| TraesCS4A01G211700.2 | Wheat | nucleus, plastid | 48.7 | 50.16 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 48.7 | 50.0 |
| HORVU4Hr1G017140.2 | Barley | plastid | 48.7 | 49.89 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 47.24 | 49.62 |
| KXG28056 | Sorghum | nucleus, plastid | 48.18 | 49.36 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 47.76 | 49.35 |
| Zm00001d023706_P002 | Maize | nucleus | 46.41 | 49.17 |
| KXG23150 | Sorghum | nucleus | 47.14 | 48.87 |
| Zm00001d041803_P001 | Maize | nucleus | 45.79 | 48.03 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 12.49 | 42.25 |
| KRG88471 | Soybean | nucleus, plastid | 17.27 | 38.78 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 36.63 | 36.67 |
| KRH38603 | Soybean | plastid | 18.21 | 32.96 |
| KRH38604 | Soybean | nucleus | 26.43 | 31.44 |
| KRH09131 | Soybean | nucleus, plastid | 27.99 | 30.96 |
| KRH09132 | Soybean | plastid | 27.89 | 30.49 |
| CDY69476 | Canola | nucleus | 6.76 | 23.81 |
| PGSC0003DMT400092079 | Potato | nucleus | 17.48 | 22.73 |
Protein Annotations
| EMBL:ACUP02003459 | EnsemblPlants:KRH53367 | EnsemblPlantsGene:GLYMA_06G121500 | EntrezGene:100799771 | InterPro:LIM-bd/SEUSS | PANTHER:PTHR10378 |
| PANTHER:PTHR10378:SF17 | PFAM:PF01803 | ProteinID:KRH53367 | ProteinID:KRH53367.1 | SEG:seg | UniParc:UPI0006EE039A |
| UniProt:A0A0R0JFN7 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:9892482..9901464
Molecular Weight (calculated)
104633.0 Da
IEP (calculated)
9.249
GRAVY (calculated)
-0.605
Length
961 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIQKPQVES SSLFVPSQFV DQFPDSVTVQ FRNFQLSVSH GDCLKTVISK KMVPPGPPTP IGGAQSVSPS LLRSNSGMLG AQGGPMPPQS SFPSLVSPRT
101: QFNNMNILGN MSNVTSILNQ SFPNGVPNPG LSGPGSSQRG AIDTGAETDP LSSVGNGMSF NNSSSTFVQS SIVNAASSGQ GQGQQFSNPS SNQLLPDQQH
201: SQQLEPQNFQ HGQQSMQQFS APLNTQQPPQ PQPHFQSIRG GIGGMGPVKL EQVSNDQLGQ QQQQQLQSLR NLASVKLEPQ QMQTMRTLGP VKMEPQHSDQ
301: PLFLQQQQQQ QQQQFLHMSS QSSQAAAAQI NLLRHHRLLQ LQQQHQQQQL LKAMPQQRSQ LPQQFQQQNM SMRSPAKPAY EPGMCARRLT HYMYQQQHRP
401: EDNNIEFWRK FVAEYFAPNA KKKWCVSMYG SGRQTTGVFP QDVWHCEICN RKPGRGFEAT VEVLPRLFKI KYESGTLEEL LYVDMPREYH NSSGQIVLDY
501: AKAIQESVFE QLRVVRDGQL RIVFSPDLKI CSWEFCARRH EELIPRRLLI PQVSQLGAVA QKYQSFTQNA TPNVSVPELQ NNCNMFVASA RQLVKALEVP
601: LVNDLGYTKR YVRCLQISEV VNSMKDLIDY SRETGTGPME SLAKFPRRTS GSAGPRGQAQ QHEEQLQQQQ QQQMVAHNSN GDQNSVRAAA MQIASSNGMV
701: SVNNSVNPAS TSTTTSTIVG LLHQNSMNSR QQNSMNNASS PYGGSSVQIP SPGSSSTVPQ GQPNSSPFQS PTPSSSNNPP QTSHPALTSA NHTSTTNSPA
801: NISMQQQQSS ISGEPDPSDA QSSVQKIIHE MMMSSQINGN GGMVGVGSLG NDVKNVSGIL PVSANTGLNG GNGLVGNGPM NSNSGVGVGN YGTMGLGQSA
901: MPNGIRTAMV NNSIMNGRGG MASLARDQAM NHQQDLSNQL LSGLGAVGGF NNLQFDWKPS P
101: QFNNMNILGN MSNVTSILNQ SFPNGVPNPG LSGPGSSQRG AIDTGAETDP LSSVGNGMSF NNSSSTFVQS SIVNAASSGQ GQGQQFSNPS SNQLLPDQQH
201: SQQLEPQNFQ HGQQSMQQFS APLNTQQPPQ PQPHFQSIRG GIGGMGPVKL EQVSNDQLGQ QQQQQLQSLR NLASVKLEPQ QMQTMRTLGP VKMEPQHSDQ
301: PLFLQQQQQQ QQQQFLHMSS QSSQAAAAQI NLLRHHRLLQ LQQQHQQQQL LKAMPQQRSQ LPQQFQQQNM SMRSPAKPAY EPGMCARRLT HYMYQQQHRP
401: EDNNIEFWRK FVAEYFAPNA KKKWCVSMYG SGRQTTGVFP QDVWHCEICN RKPGRGFEAT VEVLPRLFKI KYESGTLEEL LYVDMPREYH NSSGQIVLDY
501: AKAIQESVFE QLRVVRDGQL RIVFSPDLKI CSWEFCARRH EELIPRRLLI PQVSQLGAVA QKYQSFTQNA TPNVSVPELQ NNCNMFVASA RQLVKALEVP
601: LVNDLGYTKR YVRCLQISEV VNSMKDLIDY SRETGTGPME SLAKFPRRTS GSAGPRGQAQ QHEEQLQQQQ QQQMVAHNSN GDQNSVRAAA MQIASSNGMV
701: SVNNSVNPAS TSTTTSTIVG LLHQNSMNSR QQNSMNNASS PYGGSSVQIP SPGSSSTVPQ GQPNSSPFQS PTPSSSNNPP QTSHPALTSA NHTSTTNSPA
801: NISMQQQQSS ISGEPDPSDA QSSVQKIIHE MMMSSQINGN GGMVGVGSLG NDVKNVSGIL PVSANTGLNG GNGLVGNGPM NSNSGVGVGN YGTMGLGQSA
901: MPNGIRTAMV NNSIMNGRGG MASLARDQAM NHQQDLSNQL LSGLGAVGGF NNLQFDWKPS P
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.