CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95960
CDY04265
CDY07357
CDY33554
CDY65811

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	CDX95960	AT1G69120.1	16854969
AT1G43850.1	CDY04265	AT1G69120.1	16854969
AT1G43850.1	CDY07357	AT1G69120.1	16854969
AT1G43850.1	CDY33554	AT1G69120.1	16854969
AT1G43850.1	CDY65811	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032192.1-P	Field mustard	nucleus, plastid	85.79	85.79
CDY67669	Canola	mitochondrion, nucleus	24.03	78.15
CDY14963	Canola	nucleus, plastid	63.05	66.12
AT1G43850.1	Thale cress	nucleus, plastid	68.73	60.66
CDY70167	Canola	cytosol, mitochondrion, nucleus	19.51	53.17
Solyc06g059750.2.1	Tomato	nucleus, plastid	52.07	48.09
KRH15928	Soybean	nucleus, plastid	56.2	47.54
KRH64564	Soybean	nucleus, plastid	55.68	47.31
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	55.43	46.99
KRH18102	Soybean	plastid	56.07	46.77
Solyc06g059760.2.1	Tomato	nucleus, plastid	53.75	46.33
KRH53367	Soybean	nucleus	55.94	45.06
GSMUA_Achr10P...	Banana	nucleus, plastid	49.74	43.8
GSMUA_Achr2P20700_001	Banana	plastid	47.29	42.71
GSMUA_Achr6P18610_001	Banana	plastid	47.03	41.55
Os11t0207000-01	Rice	nucleus, plastid	47.93	40.59
GSMUA_Achr3P02850_001	Banana	nucleus	46.25	39.96
Zm00001d007295_P003	Maize	nucleus, plastid	46.9	39.67
Os11t0207100-01	Rice	nucleus	47.8	39.66
KXG28056	Sorghum	nucleus, plastid	47.93	39.55
TraesCS4D01G101500.1	Wheat	nucleus, plastid	45.87	39.1
Zm00001d049125_P002	Maize	nucleus, plastid	46.9	39.03
KXG23150	Sorghum	nucleus	46.51	38.84
TraesCS4B01G104300.1	Wheat	nucleus, plastid	45.74	38.82
Zm00001d041803_P001	Maize	nucleus	45.87	38.76
TraesCS4A01G211800.1	Wheat	nucleus, plastid	45.48	38.68
Zm00001d023706_P002	Maize	nucleus	45.22	38.59
HORVU4Hr1G017140.2	Barley	plastid	46.64	38.49
TraesCS4A01G211700.2	Wheat	nucleus, plastid	46.38	38.48
TraesCS4B01G104400.2	Wheat	nucleus, plastid	46.38	38.44
TraesCS4D01G101700.1	Wheat	nucleus, plastid	46.25	38.25
HORVU4Hr1G017160.3	Barley	nucleus, plastid	44.96	37.74
CDY57709	Canola	nucleus, plastid	21.32	33.54
CDY69476	Canola	nucleus	10.98	31.14
GSMUA_Achr5P25900_001	Banana	nucleus	37.34	30.1
CDX92714	Canola	cytosol	20.28	29.51
CDY52362	Canola	nucleus	25.97	29.22
CDX92713	Canola	nucleus, plastid	25.84	29.11
CDY50201	Canola	nucleus, plastid	25.06	28.45
CDY54085	Canola	nucleus, plastid	25.84	28.37
CDY30691	Canola	nucleus	27.39	27.97
CDX89417	Canola	nucleus	12.66	25.45
PGSC0003DMT400092079	Potato	nucleus	20.8	21.79

Protein Annotations

EnsemblPlants:CDY40943	EnsemblPlantsGene:GSBRNA2T00072173001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF16	PFAM:PF01803
ProteinID:CDY40943	ProteinID:CDY40943.1	SEG:seg	UniParc:UPI0004EEDCBC	UniProt:A0A078HVX1	MapMan:35.1

Description

BnaAnng06520DBnaAnng06520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVX1]

Coordinates

chrLK032485:+:270428..274369

Molecular Weight (calculated)

84901.0 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.652

Length

774 amino acids

Sequence
(BLAST)

001: MVPSEAPNPV GSGENVPTGG APLPSQPAFP QFSNNMSMSM LGNAPNISSL LNNHSFVNGS GAESDPLSSV GFSGLSSFNA SMVSPSSSGQ VQGHQFSNQL
101: LAEQQRNKKM EPQNFQQQQQ QQFPTVRGGV GPVKLEPGQV SNDQQQQKML RNLGSSVKLE PQQLQAMRSM AQVKMEPQQH SEQSLFLQQQ RQQHQFLQMP
201: GQSSSQAQMN NIFQQQRLMQ LQQQQQLLKS MPQQRPQLPQ QSLPLRPPMK PVYEPGMGAQ RLTQYMYRQQ HRPEDNNIEF WRKFVAEYFA PNAKKRWCVS
301: MYGSGRQTTG VFPQDVWHCE ICNRKPGRGF EATAEVLPRL FKIKYESGTL EELLYVDMPR ESQNSSGQIV LEYAKATQES VFEHLRVVRD GQLRIVFSPD
401: LKIFSWEFCA RRHEELIPRR LLIPQVSQLG SAAQKYQQAA QNATTDSALP ELQNNCNMFV ASARQLAKAL EVPLVNDLGY TKRYVRCLQI SEVVNSMKDL
501: IDYSRETRTG PIESLAKFPR RTGPSSVLPG PSPQQPNEQL RQIANNDQSS GVNYAFNAAS ACTSSTSSIA GLIHQNSMKQ RHQNAAYNPP NSPYGGNSVQ
601: MASPSSSGTM APLSQQHNLT SFQSPTSSSN NNNNLSQNGM TCVNNHMGST AIQQAAGDEA NGSSSVQKIL NEILMSNQAH NTLGGGSMVG SEGKGGSNVN
701: SSDVLMMNGQ VNNNSSNTNI GGGGGVGMGA NGNNGLMNGR VGMLVRDPNV QPDLGNQLLG AVNGFNNFQR DWNA

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.