CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50201	Canola	nucleus, plastid	86.03	86.66
CDY54085	Canola	nucleus, plastid	73.51	71.63
CDY52362	Canola	nucleus	69.58	69.48
CDX89417	Canola	nucleus	38.28	68.31
AT4G25515.1	Thale cress	nucleus, plastid	67.1	67.3
AT4G25520.1	Thale cress	plastid	66.81	61.36
CDY57709	Canola	nucleus, plastid	43.81	61.18
CDX92714	Canola	cytosol	40.32	52.07
KRG88471	Soybean	nucleus, plastid	31.88	51.17
Solyc03g026190.2.1	Tomato	plastid	38.43	46.81
KRH38603	Soybean	plastid	34.06	44.07
KRH38604	Soybean	nucleus	48.33	41.09
CDY30691	Canola	nucleus	44.83	40.63
VIT_16s0100g00500.t01	Wine grape	plastid	50.8	40.39
KRH09131	Soybean	nucleus, plastid	50.95	40.28
KRH09132	Soybean	plastid	49.2	38.45
CDY67669	Canola	mitochondrion, nucleus	13.25	38.24
GSMUA_Achr1P16220_001	Banana	nucleus	37.12	36.48
PGSC0003DMT400037024	Potato	plastid	48.18	36.14
GSMUA_Achr1P07930_001	Banana	nucleus	40.61	35.14
GSMUA_Achr10P...	Banana	nucleus	38.86	34.45
KXG34470	Sorghum	nucleus, plastid	36.54	34.01
Zm00001d018890_P006	Maize	nucleus, plastid	35.08	32.01
KXG19170	Sorghum	plastid	36.24	31.88
TraesCS7A01G520700.1	Wheat	nucleus	37.26	31.72
Zm00001d045516_P006	Maize	nucleus, plastid	35.66	31.61
TraesCS7B01G437100.1	Wheat	plastid	37.12	31.6
GSMUA_Achr7P05870_001	Banana	nucleus	13.1	31.47
Os06t0126000-02	Rice	cytosol, nucleus	37.55	31.39
Zm00001d035990_P002	Maize	plastid	35.52	31.28
HORVU7Hr1G115870.4	Barley	plastid	35.23	30.06
TraesCS7D01G510400.2	Wheat	nucleus	37.41	29.57
TraesCS7D01G146100.2	Wheat	nucleus, plastid	36.24	29.57
GSMUA_Achr2P03310_001	Banana	nucleus	34.64	29.49
TraesCS7A01G144600.3	Wheat	nucleus, plastid	36.1	29.01
TraesCS7D01G050000.5	Wheat	nucleus, plastid	36.1	28.94
TraesCS7B01G047100.4	Wheat	plastid	35.81	28.91
HORVU7Hr1G010050.2	Barley	nucleus, plastid	36.54	28.69
TraesCS4A01G441500.1	Wheat	nucleus, plastid	35.95	28.62
TraesCS7A01G054900.2	Wheat	nucleus, plastid	36.1	28.28
HORVU7Hr1G029650.10	Barley	plastid	35.95	28.26
CDY14963	Canola	nucleus, plastid	28.09	26.15
CDY40943	Canola	nucleus, plastid	29.11	25.84
CDY70167	Canola	cytosol, mitochondrion, nucleus	8.73	21.13
CDY69476	Canola	nucleus	4.66	11.72

Protein Annotations

EnsemblPlants:CDX92713	EnsemblPlantsGene:GSBRNA2T00154531001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:CDX92713	ProteinID:CDX92713.1	SEG:seg	UniParc:UPI0004EE07FC	MapMan:35.1	:

Description

BnaC07g39710D

Coordinates

chrLK031873:+:468014..471159

Molecular Weight (calculated)

76752.1 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.684

Length

687 amino acids

Sequence
(BLAST)

001: MNKATFAGAI ESSFSLTDAL TMQRNGGINN PRIPTSPMSF SNNNINVPGS LVLDGSASMQ QGGQGSVPMR ESPSYSHVDK KPKLEVKQED MLQQQVLQQY
101: IQRQDPGGRN PQLQALLHQQ RMRQQQQILQ SMSPSQRLQL QQQQQLLRQQ QGAQQIPPSV RPFEPGVCAR KLMMYLYHLQ QRPAENCITY WRKFVAEYFS
201: PRAKQRLCLS QYESAGHHAL GMVSQAAPDM WQCDLCGTKS GKGFEATFDV LARLNEIKFA SGIIDEFLYL DLPRENRFSN GLMMLEYRKA VQETVHEQFR
301: VIREGHLRII FSQDLKILSW EFCARRHEEL LLRRLIAPQV NQLLQVALKC QSTISESGSE GVSKQDLQSN SNMVLGAGRQ LAKFMELQSL NDLGYPKRYI
401: RTLQISEVVK SMKDLMNFTG EQKIGPIEGL KRLFEQTAAV KLQRRKEMEQ LGNSGAIMNA SSQAQMALTQ GTMNGLTGNN NHPQIVGRGA MNGSAQAAAA
501: LTNYQSMLMR QNAMNNPNSK QEGFSSQSQS PSSSSHQRQN FAKGGFSSSP QMQQQQQQQR TMNGAPNTLQ QNPSHRLLQP PHSHGNNQEQ QMLHQMLQQM
601: SENGANVQQQ QAFSGQSGGN SNAERNPTAS TSNISGGGGR VPSRNNSFKS ASNSNLHLTE DIPPITELPH DFSADDFFNN SDIYGSL

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.