CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54085	Canola	nucleus, plastid	89.68	87.52
Bra010458.1-P	Field mustard	nucleus, plastid	71.08	81.09
CDY50201	Canola	nucleus, plastid	70.49	71.11
AT4G25515.1	Thale cress	nucleus, plastid	70.64	70.95
CDX92713	Canola	nucleus, plastid	69.48	69.58
CDX89417	Canola	nucleus	37.65	67.27
AT4G25520.1	Thale cress	plastid	69.48	63.9
CDY57709	Canola	nucleus, plastid	44.91	62.8
CDX92714	Canola	cytosol	41.86	54.14
KRG88471	Soybean	nucleus, plastid	31.83	51.17
Solyc03g026190.2.1	Tomato	plastid	38.66	47.16
KRH38603	Soybean	plastid	33.72	43.69
KRH38604	Soybean	nucleus	48.98	41.71
VIT_16s0100g00500.t01	Wine grape	plastid	51.6	41.09
KRH09131	Soybean	nucleus, plastid	51.74	40.97
CDY30691	Canola	nucleus	43.9	39.84
KRH09132	Soybean	plastid	50.0	39.14
PGSC0003DMT400037024	Potato	plastid	49.42	37.12
GSMUA_Achr1P16220_001	Banana	nucleus	37.21	36.62
CDY67669	Canola	mitochondrion, nucleus	12.5	36.13
KXG34470	Sorghum	nucleus, plastid	37.79	35.23
GSMUA_Achr1P07930_001	Banana	nucleus	39.24	34.01
Zm00001d018890_P006	Maize	nucleus, plastid	36.63	33.47
GSMUA_Achr10P...	Banana	nucleus	37.35	33.16
KXG19170	Sorghum	plastid	36.63	32.27
Zm00001d045516_P006	Maize	nucleus, plastid	36.05	32.0
TraesCS7A01G520700.1	Wheat	nucleus	37.35	31.85
GSMUA_Achr7P05870_001	Banana	nucleus	13.23	31.82
TraesCS7B01G437100.1	Wheat	plastid	37.06	31.6
Zm00001d035990_P002	Maize	plastid	35.61	31.41
Os06t0126000-02	Rice	cytosol, nucleus	37.06	31.02
HORVU7Hr1G115870.4	Barley	plastid	34.88	29.81
TraesCS7D01G510400.2	Wheat	nucleus	37.5	29.69
GSMUA_Achr2P03310_001	Banana	nucleus	33.87	28.87
TraesCS7D01G146100.2	Wheat	nucleus, plastid	34.3	28.03
TraesCS7D01G050000.5	Wheat	nucleus, plastid	34.59	27.77
TraesCS7A01G144600.3	Wheat	nucleus, plastid	34.45	27.72
HORVU7Hr1G010050.2	Barley	nucleus, plastid	35.17	27.66
TraesCS7B01G047100.4	Wheat	plastid	34.01	27.5
TraesCS4A01G441500.1	Wheat	nucleus, plastid	34.45	27.46
HORVU7Hr1G029650.10	Barley	plastid	34.88	27.46
TraesCS7A01G054900.2	Wheat	nucleus, plastid	34.59	27.14
CDY40943	Canola	nucleus, plastid	29.22	25.97
CDY14963	Canola	nucleus, plastid	27.76	25.88
CDY70167	Canola	cytosol, mitochondrion, nucleus	8.58	20.77
CDY69476	Canola	nucleus	5.23	13.19

Protein Annotations

EnsemblPlants:CDY52362	EnsemblPlantsGene:GSBRNA2T00006796001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:CDY52362	ProteinID:CDY52362.1	SEG:seg	UniParc:UPI0004EE3C3B	UniProt:A0A078IQY4	MapMan:35.1

Description

BnaA08g30970DBnaA08g30970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQY4]

Coordinates

chrLK033080:+:61913..65601

Molecular Weight (calculated)

77328.4 Da

IEP (calculated)

9.260

GRAVY (calculated)

-0.779

Length

688 amino acids

Sequence
(BLAST)

001: MQRNSGINNM RIPTPTPMSF SSNNINIPGS LVIDGSASMQ QHLSQQQQQQ QAGQSSVPMR ENDYSHVDKK PRIEVKQEGM LQQQIFQQLI QRQDPTGRNT
101: QLQALLQQQR LRQQQQILQS MSPSQRLQLQ QQQQQLRQQL QQPGGTQQQI PPNVRPYDVG VCARKMMMYL YHLQQRPAEN CISYWRKFVA EYFSPRAKQR
201: LCLSQYESAG HHALGMFQQA APDMWQCDLC STKSGKGFEA TFDVLARLIE IKFASGIIDE LLYLDHPREH RFTNGLMMLE YRKAVQETVH EQFRVVREGH
301: LRIIFSQDLK ILTWEFCARR HEELLLRRLI APQVNQLLQV AQKCQNTISE SGSEGVSQQD LQSNSNMVLG AGRQLAKFME LQSLNDLGYP KRYIRTLQIS
401: EVVKSMKDLM NFTGEHKVGP IEGLRRLLEQ TATSKLQRQK VQEMEHMGNN GAMNGSAQAQ MALTPGTMNG LIGNNNSNSS NSNNHHQLVG RGAMNGSAQA
501: AAALTNYQSM LMRQNAMNNP NSNAVKEEGF STQNPTQSPS SSSHQRQNLA TPGFPSSPQM QQQQQQQRNM NGPPHHLQPP HSHGNNQGQQ MLNQLLQEIS
601: ENGPSLQQQQ AFSGQSGGGN NNAERNPAAS TSSISGGGGR VPSRNNSFKA VVSNNNNHHL PEDLSIPELS HDFSEDAFFN NSDIYGSL

Best Arabidopsis Sequence Match ( AT4G25520.1 )
(BLAST)

001: MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENNYSHVDKK
101: PRLEVKQEDM LQQQILQQLI QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN VRPYEVGVCA RKLMMYLYHL
201: QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA LGMFPQAAPD MWQCDLCGTK SGKGFEATFD VLARLIEIKF ASGIIDELLY LDHPRENRFP
301: NGLMMLEYRK AVQETVHEQF RVVREGHLRI IFSQDLKILS WEFCARRHEE LLLRRLIAPQ VNQLLQVAQK CQSTISESGS EGVSQQDLQS NSNMVLGAGR
401: QLAKFMELQS LNDLGYPKRY IRTLQISEVV KSMKDLMNFT GEQKIGPIEG LKRLLEQTVT VKLQKQKMQE MEQFGNNGAI NGPVQAQMVL TSGTMNGSTG
501: NNTNNHHQIV GRGAMSGPAE GQMVISSGTV SGATANNNSN NHNQIVGRGA MNGSAQAAAA LTNYQSMLMR QNAMNNPNSN TGKQEGFSSQ NPTPNSNQSP
601: SSSSQQRHNL VTGGFPNSPQ MQQQQRTMNG PTNILPQNHP HQLQSPHSHG NTPEQQMLHQ LLQEMSENGG SVQQQQAFSG QSGSNSNAER NTTASTSNIS
701: GGGRAPSRNN SFKAASNNNL HFSEDISITD HDFSEDGFFN NNDIYGGL

Arabidopsis Description

SLK1Probable transcriptional regulator SLK1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.