Factsheet for HORVU7Hr1G010050.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G022130.3
HORVU2Hr1G061320.3
HORVU2Hr1G072180.1
HORVU2Hr1G072210.1
HORVU3Hr1G061870.1
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU5Hr1G092190.1
HORVU5Hr1G098570.6
HORVU7Hr1G082420.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	HORVU1Hr1G022130.3	AT2G47700.1	21798944
AT5G62090.1	HORVU2Hr1G072180.1	AT3G44720.1	21798944
AT5G62090.1	HORVU2Hr1G072210.1	AT3G44720.1	21798944
AT5G62090.1	HORVU5Hr1G092190.1	AT3G44720.1	21798944
AT5G62090.1	HORVU3Hr1G061870.1	AT3G58630.1	21798944
AT5G62090.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT5G62090.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT5G62090.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT5G62090.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT5G62090.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT5G62090.1	HORVU7Hr1G082420.2	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G146100.2	Wheat	nucleus, plastid	89.83	93.35
TraesCS7A01G144600.3	Wheat	nucleus, plastid	89.71	91.81
HORVU7Hr1G029650.10	Barley	plastid	90.74	90.85
TraesCS7D01G050000.5	Wheat	nucleus, plastid	88.69	90.55
TraesCS4A01G441500.1	Wheat	nucleus, plastid	89.26	90.5
TraesCS7A01G054900.2	Wheat	nucleus, plastid	90.4	90.19
TraesCS7B01G047100.4	Wheat	plastid	87.66	90.13
HORVU7Hr1G115870.4	Barley	plastid	63.31	68.82
Os06t0126000-02	Rice	cytosol, nucleus	62.06	66.06
KXG19170	Sorghum	plastid	55.54	62.23
KXG34470	Sorghum	nucleus, plastid	51.77	61.38
Zm00001d035990_P002	Maize	plastid	52.57	58.97
Zm00001d045516_P006	Maize	nucleus, plastid	51.77	58.45
Zm00001d018890_P006	Maize	nucleus, plastid	47.43	55.11
GSMUA_Achr7P05870_001	Banana	nucleus	15.09	46.15
Solyc03g026190.2.1	Tomato	plastid	27.89	43.26
KRG88471	Soybean	nucleus, plastid	20.23	41.36
GSMUA_Achr1P16220_001	Banana	nucleus	32.91	41.2
KRH38603	Soybean	plastid	24.23	39.92
GSMUA_Achr1P07930_001	Banana	nucleus	34.06	37.53
KRH38604	Soybean	nucleus	34.51	37.38
GSMUA_Achr10P...	Banana	nucleus	33.03	37.29
CDX92713	Canola	nucleus, plastid	28.69	36.54
CDY57709	Canola	nucleus, plastid	20.34	36.18
CDY50201	Canola	nucleus, plastid	27.89	35.78
Bra019159.1-P	Field mustard	nucleus, plastid	27.89	35.78
VIT_16s0100g00500.t01	Wine grape	plastid	35.09	35.53
CDX89417	Canola	nucleus	15.54	35.32
CDY52362	Canola	nucleus	27.66	35.17
CDY54085	Canola	nucleus, plastid	28.23	35.04
KRH09131	Soybean	nucleus, plastid	34.74	34.98
AT4G25515.1	Thale cress	nucleus, plastid	27.31	34.89
CDY30691	Canola	nucleus	29.94	34.56
KRH09132	Soybean	plastid	34.4	34.24
CDX92714	Canola	cytosol	20.23	33.27
VIT_02s0025g04390.t01	Wine grape	vacuole	25.94	33.04
PGSC0003DMT400037024	Potato	plastid	34.51	32.97
AT5G62090.1	Thale cress	nucleus	30.63	32.84
AT4G25520.1	Thale cress	plastid	28.0	32.75
GSMUA_Achr2P03310_001	Banana	nucleus	30.06	32.59
Bra010458.1-P	Field mustard	nucleus, plastid	22.29	32.34
Bra013897.1-P	Field mustard	nucleus	14.29	31.33
Bra029289.1-P	Field mustard	nucleus	23.2	30.71
HORVU4Hr1G017160.3	Barley	nucleus, plastid	22.06	20.93
HORVU4Hr1G017140.2	Barley	plastid	22.29	20.79

Protein Annotations

EnsemblPlants:HORVU7Hr1G010050.2	EnsemblPlantsGene:HORVU7Hr1G010050	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	SEG:seg	UniParc:UPI000B482883	UniProt:A0A287VHM7	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr7H:-:13700384..13709196

Molecular Weight (calculated)

97232.6 Da

IEP (calculated)

9.196

GRAVY (calculated)

-0.836

Length

875 amino acids

Sequence
(BLAST)

001: MSGAPRSNLG LVPRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFMRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKR
101: RASSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PLAQPGIQLA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKSG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH AKVVQKSIYE HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT EQVTHMLRAT
401: QSYQATLTKN GPAGLSNDEA QNACNQFALA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEM SPYVNNEVPG VGAISNNPQN PAPQSNYQHI LRSSSANQSL LQQEASQNAA AMSSYQNMFR SSSANQGLLQ QETSQNAAAL NNYQNMLRGS
601: SPNQSLLQQE TSSIFKGPTA VHSGIQLEAS RSFRAAQLGQ FQHPMSFQQG MPQHQHNNFQ GLGASPQFQQ HVINQLLQEA KNTNSRALQQ QNHQQQQPQQ
701: QQNHQQQHQQ QNHQQQQPQQ HQQQHQQQHQ QQQNHQQQQP QQHQQQQQHQ HQQQQQSPST PNANGGLASG AAVANTAASG EQAQHMNNGA AKGAAPMGMT
801: GPSNLINSGA GMVQRSSSFK SVSSNPAASG GNVETPKAES VHDMDELEHL ISHELVGSGL FMGEQPGDGG FSWNI

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.