Factsheet for Bra029289.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra003023.1-P
Bra003346.1-P
Bra004436.1-P
Bra007407.1-P
Bra019468.1-P
Bra022685.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	Bra004436.1-P	AT2G47700.1	21798944
AT5G62090.1	Bra019468.1-P	AT3G44720.1	21798944
AT5G62090.1	Bra003346.1-P	AT3G58630.1	21798944
AT5G62090.1	Bra007407.1-P	AT3G58630.1	21798944
AT5G62090.1	Bra000638.1-P	AT4G08150.1	21798944
AT5G62090.1	Bra003023.1-P	AT5G53950.1	21798944
AT5G62090.1	Bra022685.1-P	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30691	Canola	nucleus	83.66	72.96
AT5G62090.1	Thale cress	nucleus	60.67	49.14
KRG88471	Soybean	nucleus, plastid	30.86	47.66
Solyc03g026190.2.1	Tomato	plastid	37.67	44.15
Bra010458.1-P	Field mustard	nucleus, plastid	36.31	39.8
KRH38603	Soybean	plastid	31.01	38.61
VIT_16s0100g00500.t01	Wine grape	plastid	50.23	38.43
KRH09131	Soybean	nucleus, plastid	49.17	37.4
KRH38604	Soybean	nucleus	44.93	36.76
Bra019159.1-P	Field mustard	nucleus, plastid	37.52	36.36
Bra013897.1-P	Field mustard	nucleus	21.48	35.59
KRH09132	Soybean	plastid	46.9	35.27
PGSC0003DMT400037024	Potato	plastid	48.11	34.72
GSMUA_Achr1P16220_001	Banana	nucleus	35.1	33.19
GSMUA_Achr10P...	Banana	nucleus	37.22	31.74
GSMUA_Achr1P07930_001	Banana	nucleus	36.31	30.23
Zm00001d045516_P006	Maize	nucleus, plastid	33.74	28.77
KXG34470	Sorghum	nucleus, plastid	31.62	28.32
KXG19170	Sorghum	plastid	33.43	28.3
Zm00001d035990_P002	Maize	plastid	32.53	27.56
Os06t0126000-02	Rice	cytosol, nucleus	34.19	27.49
GSMUA_Achr2P03310_001	Banana	nucleus	32.83	26.89
TraesCS7A01G520700.1	Wheat	nucleus	32.22	26.39
Zm00001d018890_P006	Maize	nucleus, plastid	29.95	26.29
TraesCS7B01G437100.1	Wheat	plastid	31.62	25.9
HORVU7Hr1G115870.4	Barley	plastid	30.71	25.22
Bra032192.1-P	Field mustard	nucleus, plastid	28.59	24.42
TraesCS7D01G510400.2	Wheat	nucleus	32.07	24.4
Bra036931.1-P	Field mustard	nucleus, plastid	26.48	23.58
GSMUA_Achr7P05870_001	Banana	nucleus	10.14	23.43
TraesCS7D01G146100.2	Wheat	nucleus, plastid	29.65	23.28
HORVU7Hr1G010050.2	Barley	nucleus, plastid	30.71	23.2
TraesCS7B01G047100.4	Wheat	plastid	29.5	22.91
TraesCS7A01G144600.3	Wheat	nucleus, plastid	29.5	22.81
TraesCS7D01G050000.5	Wheat	nucleus, plastid	29.5	22.75
TraesCS4A01G441500.1	Wheat	nucleus, plastid	29.35	22.48
TraesCS7A01G054900.2	Wheat	nucleus, plastid	29.5	22.23
HORVU7Hr1G029650.10	Barley	plastid	29.35	22.2

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra029289	EnsemblPlants:Bra029289.1	EnsemblPlants:Bra029289.1-P	GO:GO:0000003	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009908	GO:GO:0010044	GO:GO:0047484	GO:GO:0048467	GO:GO:0048481	GO:GO:1901001
InterPro:LIM-bd/SEUSS	UniProt:M4EKH2	PFAM:PF01803	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	UniParc:UPI0002545BAB
SEG:seg	:	:	:	:	:

Description

AT5G62090 (E=5e-200) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: SLK1 (SEUSS-LIKE 1); transcription regulator (TAIR:AT4G25520.1); Has 38202 Blast hits to 15459 proteins in 742 species: Archae - 6; Bacteria - 1392; Metazoa - 14682; Fungi - 3752; Plants - 2341; Viruses - 407; Other Eukaryotes - 15622 (source: NCBI BLink).

Coordinates

chrA02:-:26091609..26094825

Molecular Weight (calculated)

71982.2 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.649

Length

661 amino acids

Sequence
(BLAST)

001: MRSFVDIYIK GGTFVMAGGG LTPSSSASGI FFQGGGDDES QGGGGGGFMN SHFTSSYGNS SNPGCGGGPG YHNPAMMSVS TPGASSMLTD ANSGGGGISG
101: GGPHLQRSAS INNESYMRLP ASPLSFSSSS VADGSTVVQR PPPPHHDPRG GSSATSIPTS RRASETFFQD PGQARKKPRE GSIGYWRKFV NEYFSPRAKK
201: RWCLSHYDNV GHNTLGVSPQ AATDEWQCDL CGSKSGRGFE ATFDVLPRLN EIKFASGVID ELLYLSVPSE RRFPSGIMVL EYAKAVQESV YEHIRVVREG
301: HLRIIFSQEL KILSWEFCTR RHEELLPRRL VAPQVNQLLQ VAEKCQSTID QSGPDGIHQQ DLQANSNMVM AAGRQLAKSL ESHSLNDLGF SKRYVRCLQI
401: SEVVSSMKDM IDFCRDQKVG PIEALKSYPY RMRTGKMQMQ EMEQVANAAQ GLPPDRSSLN KLMALRNNNN MNGQGSAQAA AFALTNYQTM LMKQNQEQTN
501: GALQQESSRN MSPSPSYQGA GSLLGGVSSH MSPQRQMPSS SYNSSPHQQY QQQQPSCSGS NQALEQQIHQ IWQQMANSNG GSGQQQQQQQ SLSGQNMGRN
601: RTDYVPTVET PSTSNRFRGM KGLDEGQNQE GMVSSNASLS FENNGFFGSE VDESMGYPWK A

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.