CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90950
EER91090
EER95833
EER96348
EES03423
EES10725
EES18672
EES19051
KXG23228
KXG32474
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	EES19051	AT2G47700.1	21798944
AT5G62090.1	KXG32474	AT2G47700.1	21798944
AT5G62090.1	EER96348	AT3G44720.1	21798944
AT5G62090.1	EES10725	AT3G44720.1	21798944
AT5G62090.1	EES03423	AT3G58630.1	21798944
AT5G62090.1	EES18672	AT3G58630.1	21798944
AT5G62090.1	EER90950	AT4G08150.1	21798944
AT5G62090.1	EER91090	AT4G08150.1	21798944
AT5G62090.1	EER95833	AT4G08150.1	21798944
AT5G62090.1	OQU90921	AT4G08150.1	21798944
AT5G62090.1	OQU91064	AT4G08150.1	21798944
AT5G62090.1	KXG23228	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018890_P006	Maize	nucleus, plastid	72.22	70.78
KXG19170	Sorghum	plastid	69.78	65.94
Os06t0126000-02	Rice	cytosol, nucleus	69.24	62.17
TraesCS7A01G520700.1	Wheat	nucleus	62.87	57.5
TraesCS7B01G437100.1	Wheat	plastid	62.2	56.88
HORVU7Hr1G115870.4	Barley	plastid	59.76	54.78
TraesCS7D01G510400.2	Wheat	nucleus	63.28	53.74
TraesCS7B01G047100.4	Wheat	plastid	60.84	52.76
TraesCS7D01G146100.2	Wheat	nucleus, plastid	60.03	52.61
TraesCS7A01G144600.3	Wheat	nucleus, plastid	60.03	51.81
HORVU7Hr1G010050.2	Barley	nucleus, plastid	61.38	51.77
TraesCS7D01G050000.5	Wheat	nucleus, plastid	59.76	51.46
TraesCS4A01G441500.1	Wheat	nucleus, plastid	59.76	51.1
HORVU7Hr1G029650.10	Barley	plastid	60.43	51.03
TraesCS7A01G054900.2	Wheat	nucleus, plastid	59.89	50.4
Solyc03g026190.2.1	Tomato	plastid	31.84	41.67
GSMUA_Achr1P16220_001	Banana	nucleus	38.75	40.92
KRG88471	Soybean	nucleus, plastid	23.58	40.65
CDY57709	Canola	nucleus, plastid	25.47	38.21
GSMUA_Achr7P05870_001	Banana	nucleus	14.77	38.11
KRH38603	Soybean	plastid	27.37	38.04
CDY52362	Canola	nucleus	35.23	37.79
CDX89417	Canola	nucleus	19.51	37.4
CDY54085	Canola	nucleus, plastid	35.23	36.88
AT4G25515.1	Thale cress	nucleus, plastid	34.15	36.79
GSMUA_Achr1P07930_001	Banana	nucleus	39.43	36.65
CDX92713	Canola	nucleus, plastid	34.01	36.54
Bra019159.1-P	Field mustard	nucleus, plastid	33.6	36.36
CDY50201	Canola	nucleus, plastid	33.6	36.36
GSMUA_Achr10P...	Banana	nucleus	37.94	36.13
KRH38604	Soybean	nucleus	38.75	35.4
Bra013897.1-P	Field mustard	nucleus	18.83	34.84
VIT_16s0100g00500.t01	Wine grape	plastid	40.65	34.72
Bra010458.1-P	Field mustard	nucleus, plastid	28.32	34.66
KRH09131	Soybean	nucleus, plastid	40.65	34.52
CDY30691	Canola	nucleus	35.37	34.43
CDX92714	Canola	cytosol	24.8	34.4
VIT_02s0025g04390.t01	Wine grape	vacuole	31.71	34.06
KRH09132	Soybean	plastid	39.7	33.33
AT4G25520.1	Thale cress	plastid	33.6	33.16
AT5G62090.1	Thale cress	nucleus	35.91	32.48
PGSC0003DMT400037024	Potato	plastid	39.43	31.77
Bra029289.1-P	Field mustard	nucleus	28.32	31.62
GSMUA_Achr2P03310_001	Banana	nucleus	33.88	30.98
KXG23150	Sorghum	nucleus	25.75	20.5
KXG28056	Sorghum	nucleus, plastid	26.02	20.47

Protein Annotations

EnsemblPlants:KXG34470	EnsemblPlantsGene:SORBI_3002G045600	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:KXG34470	ProteinID:KXG34470.1	SEG:seg	UniParc:UPI00081ABAF7	UniProt:A0A1B6Q9A8	MapMan:35.1

Description

hypothetical protein

Coordinates

chr2:+:4307979..4314678

Molecular Weight (calculated)

81270.7 Da

IEP (calculated)

8.862

GRAVY (calculated)

-0.570

Length

738 amino acids

Sequence
(BLAST)

001: MTDVNSSFIG GAQLQPSRSM NTDSFMRVPA SPISFSSNNI SGSSVIDGSV VQQSPPQDQV QKRRSSSVTS HPMIEASGAL HAPKKSRIDV RQDELQQQLI
101: QQLLHGQSSL HLQGQQNPQL EALIQQHKLA QLQQRQQQLL QPFAQIQPSQ IGISRQLQLR PPLAQPGIAG PIRTPVDTGL CSRRLMQYLY HKRYRPENNP
201: ITYWRKLVEE YFAPRARERW CVSSYDKRAN ASVSTPQSAQ VTWRCDICNT HGGKGYEATY EVLPRLCQIR FDHGVIDEYL FLDMPNEFRL PNGLMLLEHT
301: KVVQKCVYEH QHVTHEGHLR IIFTPELKIM SWEFCSRRHE EYITRRVLAP QVNNLLQVAQ KYQAAASESG PAGVSNNDAQ AICNMFVTAS RQLVKNLEQH
401: TLNEHGLSKR YVRCLQISEV VNHMKDLIEF TNKNNLGPIE GLKNYPKPNV PKLPGQNLHE AKQITAAAGL PNDQNNTKVM GVKQEISAHV DNGTSVAGAI
501: GNSTPQNAAT LNSYQSLLRS SSANQSLLQQ EASSVFKGPA AMHNGIQLEA SRSFRGPNQV QLAQFQHSGS FQHPMPQHNN LQILGVQNNH QGLGASPQYQ
601: QHVLNQLLQE VKNTNGRTLP QQPPPDTPNA NSGITSGGAN TNSAATGEQA QRINSSAEKG AATVGTGPSN VINNSTASIV PSRSNSFKSV SSNPAAAAAA
701: SAAGGNAATS KAEPFHEFDD FEQLLTNELV GNEFLWDN

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.