Factsheet for Bra013897.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89417	Canola	nucleus	79.7	82.6
Bra010458.1-P	Field mustard	nucleus, plastid	53.13	35.16
Bra019159.1-P	Field mustard	nucleus, plastid	58.9	34.46
KRG88471	Soybean	nucleus, plastid	28.07	26.17
Solyc03g026190.2.1	Tomato	plastid	35.84	25.35
Bra029289.1-P	Field mustard	nucleus	35.59	21.48
GSMUA_Achr7P05870_001	Banana	nucleus	15.29	21.33
GSMUA_Achr1P16220_001	Banana	nucleus	37.34	21.32
KRH09131	Soybean	nucleus, plastid	45.36	20.83
KRH38604	Soybean	nucleus	41.6	20.54
KRH38603	Soybean	plastid	27.07	20.34
VIT_16s0100g00500.t01	Wine grape	plastid	43.61	20.14
KRH09132	Soybean	plastid	43.36	19.68
KXG34470	Sorghum	nucleus, plastid	34.84	18.83
PGSC0003DMT400037024	Potato	plastid	43.11	18.78
Zm00001d018890_P006	Maize	nucleus, plastid	32.58	17.26
GSMUA_Achr1P07930_001	Banana	nucleus	34.34	17.25
GSMUA_Achr10P...	Banana	nucleus	33.33	17.16
Zm00001d045516_P006	Maize	nucleus, plastid	32.83	16.9
Os06t0126000-02	Rice	cytosol, nucleus	34.59	16.79
KXG19170	Sorghum	plastid	32.83	16.77
TraesCS7B01G437100.1	Wheat	plastid	33.58	16.6
TraesCS7A01G520700.1	Wheat	nucleus	33.58	16.6
HORVU7Hr1G115870.4	Barley	plastid	33.33	16.52
Zm00001d035990_P002	Maize	plastid	32.08	16.41
TraesCS7D01G510400.2	Wheat	nucleus	33.83	15.54
GSMUA_Achr2P03310_001	Banana	nucleus	30.83	15.24
TraesCS7D01G146100.2	Wheat	nucleus, plastid	31.08	14.73
TraesCS7B01G047100.4	Wheat	plastid	31.08	14.57
TraesCS7A01G144600.3	Wheat	nucleus, plastid	31.08	14.5
TraesCS7D01G050000.5	Wheat	nucleus, plastid	31.08	14.47
TraesCS4A01G441500.1	Wheat	nucleus, plastid	31.08	14.37
HORVU7Hr1G010050.2	Barley	nucleus, plastid	31.33	14.29
TraesCS7A01G054900.2	Wheat	nucleus, plastid	31.33	14.25
HORVU7Hr1G029650.10	Barley	plastid	30.83	14.07
Bra032192.1-P	Field mustard	nucleus, plastid	26.57	13.7
Bra036931.1-P	Field mustard	nucleus, plastid	23.31	12.53

Protein Annotations

EnsemblPlants:Bra013897.1	EnsemblPlants:Bra013897.1-P	EnsemblPlantsGene:Bra013897	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378
PANTHER:PTHR10378:SF12	PFAM:PF01803	SEG:seg	UniParc:UPI0002546A00	UniProt:M4DBN7	MapMan:35.1

Description

AT4G25515 (E=5e-041) SLK3 | SLK3 (SEUSS-LIKE 3); transcription regulator

Coordinates

chrA01:+:8347048..8349198

Molecular Weight (calculated)

43029.8 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.360

Length

399 amino acids

Sequence
(BLAST)

001: MNKPAAVSGA VGSEALNMER SGGINNMRLP TSPMSFPSSN INIPGSLVLD GSASIQHLSQ QQQQQAGQGS VPMGESNYSH IDKKPRLDVN VVAAAVSTSV
101: DPASGPRRTE SSVASFASAA ETEATTTAAD SSILVTVSEI PTPATTAENF ITYWKKFVAE YFSPRAKQRL CLSQYENAGH HALGMFPQAA PILSWEFCAR
201: RHEELLLRRL IAPQVNQLLQ VAQKCQTTIS ESGVLGAGRQ LAKLMELQSL NDLGYPKRYI RTLQISEVVK SMKDLMNFTG DHKLGPIEGL KRLLEQTATA
301: KLQIQRMQEM EQLGNSGAMN GSSQAQMALT SGTMNGLTGN NNNNSSNNQT VGRVPSRNNS FTAASNNNLH LSKDVSVTEL SHGFSDDCFF NNSDIYGSL

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.