Factsheet for GSMUA_Achr1P07930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr2P02250_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P22810_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P09160_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P26840_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P07590_001
GSMUA_Achr8P33080_001
GSMUA_Achr9P06410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr3P22810_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P07590_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P33080_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_AchrUn_...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr1P11500_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr1P27460_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr5P09160_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr6P26840_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr9P06410_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	59.07	60.52
GSMUA_Achr1P16220_001	Banana	nucleus	49.37	56.08
KRG88471	Soybean	nucleus, plastid	29.6	54.91
GSMUA_Achr2P03310_001	Banana	nucleus	54.66	53.78
Solyc03g026190.2.1	Tomato	plastid	35.14	49.47
GSMUA_Achr7P05870_001	Banana	nucleus	16.62	46.15
KRH38603	Soybean	plastid	30.73	45.95
KRH38604	Soybean	nucleus	43.7	42.95
VIT_16s0100g00500.t01	Wine grape	plastid	45.84	42.13
KRH09131	Soybean	nucleus, plastid	45.47	41.54
CDY57709	Canola	nucleus, plastid	25.57	41.26
CDX92713	Canola	nucleus, plastid	35.14	40.61
CDX92714	Canola	cytosol	27.2	40.6
KXG19170	Sorghum	plastid	39.67	40.33
AT4G25515.1	Thale cress	nucleus, plastid	34.63	40.15
Os06t0126000-02	Rice	cytosol, nucleus	41.56	40.15
Bra019159.1-P	Field mustard	nucleus, plastid	34.38	40.03
CDY50201	Canola	nucleus, plastid	34.38	40.03
VIT_02s0025g04390.t01	Wine grape	vacuole	34.63	40.03
CDX89417	Canola	nucleus	19.4	40.0
Zm00001d045516_P006	Maize	nucleus, plastid	39.04	40.0
Zm00001d035990_P002	Maize	plastid	39.04	39.74
KXG34470	Sorghum	nucleus, plastid	36.65	39.43
CDY52362	Canola	nucleus	34.01	39.24
CDY54085	Canola	nucleus, plastid	34.76	39.15
KRH09132	Soybean	plastid	43.32	39.14
PGSC0003DMT400037024	Potato	plastid	44.71	38.76
TraesCS7B01G437100.1	Wheat	plastid	38.92	38.29
CDY30691	Canola	nucleus	36.52	38.26
Zm00001d018890_P006	Maize	nucleus, plastid	36.27	38.25
AT4G25520.1	Thale cress	plastid	35.89	38.1
TraesCS7A01G520700.1	Wheat	nucleus	38.66	38.04
Bra010458.1-P	Field mustard	nucleus, plastid	28.34	37.31
HORVU7Hr1G115870.4	Barley	plastid	37.53	37.02
TraesCS7D01G146100.2	Wheat	nucleus, plastid	38.79	36.58
AT5G62090.1	Thale cress	nucleus	37.53	36.52
Bra029289.1-P	Field mustard	nucleus	30.23	36.31
TraesCS7B01G047100.4	Wheat	plastid	38.54	35.96
TraesCS7A01G144600.3	Wheat	nucleus, plastid	38.66	35.91
TraesCS7D01G510400.2	Wheat	nucleus	38.92	35.56
TraesCS7D01G050000.5	Wheat	nucleus, plastid	38.04	35.24
TraesCS4A01G441500.1	Wheat	nucleus, plastid	38.29	35.23
TraesCS7A01G054900.2	Wheat	nucleus, plastid	38.54	34.89
Bra013897.1-P	Field mustard	nucleus	17.25	34.34
HORVU7Hr1G029650.10	Barley	plastid	37.53	34.1
HORVU7Hr1G010050.2	Barley	nucleus, plastid	37.53	34.06
GSMUA_Achr2P20700_001	Banana	plastid	28.72	26.6
GSMUA_Achr10P...	Banana	nucleus, plastid	28.84	26.05
GSMUA_Achr3P02850_001	Banana	nucleus	29.35	26.0
GSMUA_Achr6P18610_001	Banana	plastid	27.83	25.23
GSMUA_Achr5P25900_001	Banana	nucleus	23.17	19.17

Protein Annotations

EnsemblPlants:GSMUA_Achr1P07930_001	EnsemblPlants:GSMUA_Achr1T07930_001	EnsemblPlantsGene:GSMUA_Achr1G07930_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295A6E3	UniProt:M0RY01	MapMan:35.1	:	:	:

Description

transcriptional corepressor SEUSS, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G07930_001]

Coordinates

chr1:-:6095609..6112497

Molecular Weight (calculated)

89619.6 Da

IEP (calculated)

9.059

GRAVY (calculated)

-0.522

Length

794 amino acids

Sequence
(BLAST)

001: MSGNDCSGFG PASGDMNQIL NSRGNSSGPS VGASSLVTDA NSTLSGGAQL QRSTSFNNDP LQEHVRKQGL STATSQLTQR ETPNIMNAQK KMQLDIRQED
101: ILQKQLVQQL MQRHDPMQLQ GQQNPQLHAY LQQQRLMQHQ QQQQQQQQQQ IIQSFSQMQQ APINLQQQQQ LWHHVQPQTL QPVTPVKRPF DNGICSRRLM
201: QYLYHQRHRS PNNSILYWRK FVAEYFAVRA KKRWCLSLYD NMGNHALGVF PQLAVDAWQC DICGSKSGKG FEATFEALPR LFQIKFDRGV IDENLFLDMP
301: HECRLSSGAM VLKYEKAVQE SVYEHLRIVR HGQLRIIFTP ELKILFWEFC ARQHEEFLPR RLLAPQVNQL LQVAQKYQAA VSENNTAGVS HQDLQTSCNM
401: FSTAGRQLAR NLDLQSLNDL GFSKRYVRCL QISEVVSSMK DLIDFSQEQK IGPIESLKNY TRQASAKLQK QKLETEQLMS YNSLPGDQSA VSKVIGIHPG
501: LNSYMNNNIA ANQVVNGSQQ SVHALNSYQN MLRNSLNLKH NLLQQDASSS LCASKHAQQF QGSSSIITNA SANNLSGQQQ QQPTLDGCLP QQNSVQTSQV
601: NQHMQQHIIQ QLLQEMMNNN KAAPQQSLIA SNANANLAAR DAIGGGISGS IRSGIEMQNM PSNFPNNGTG AVSSRSNCFK SAATAGNPIH NSGNSLSSRP
701: DLPQNMDLPE MDHIAQEFSE SGIGDVKHNK YFYIYHRPSH YLCFRYYRWI SLHFTLRCIL LPTIFLFFLH FGGYLIPLNM ASTHYLTITI PQPF

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.