Factsheet for GSMUA_Achr2P03310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P11500_001
GSMUA_Achr1P27460_001
GSMUA_Achr2P02250_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P22810_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr5P09160_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P26840_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P07590_001
GSMUA_Achr8P33080_001
GSMUA_Achr9P06410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr3P22810_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P07590_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr8P33080_001	AT3G44720.1	21798944
AT5G62090.1	GSMUA_AchrUn_...	AT3G44720.1	21798944
AT5G62090.1	GSMUA_Achr1P11500_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr1P27460_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr5P09160_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr6P26840_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr9P06410_001	AT3G58630.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr2P13200_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr3P26230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P03120_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P28270_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr4P32230_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr5P01960_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr6P04640_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P08050_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr7P27540_001	AT4G08150.1	21798944
AT5G62090.1	GSMUA_Achr10P...	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P07930_001	Banana	nucleus	53.78	54.66
GSMUA_Achr10P...	Banana	nucleus	49.32	51.35
GSMUA_Achr1P16220_001	Banana	nucleus	42.75	49.36
KRG88471	Soybean	nucleus, plastid	25.9	48.83
Solyc03g026190.2.1	Tomato	plastid	31.1	44.5
KRH38603	Soybean	plastid	28.25	42.94
GSMUA_Achr7P05870_001	Banana	nucleus	14.62	41.26
KRH38604	Soybean	nucleus	39.9	39.85
VIT_16s0100g00500.t01	Wine grape	plastid	41.14	38.43
KRH09131	Soybean	nucleus, plastid	41.26	38.32
KRH09132	Soybean	plastid	40.64	37.32
VIT_02s0025g04390.t01	Wine grape	vacuole	31.23	36.68
CDY57709	Canola	nucleus, plastid	21.56	35.37
PGSC0003DMT400037024	Potato	plastid	40.02	35.26
CDY50201	Canola	nucleus, plastid	29.49	34.9
Bra019159.1-P	Field mustard	nucleus, plastid	29.49	34.9
CDX92713	Canola	nucleus, plastid	29.49	34.64
CDX89417	Canola	nucleus	16.48	34.55
CDY30691	Canola	nucleus	32.34	34.43
AT4G25515.1	Thale cress	nucleus, plastid	29.0	34.16
CDX92714	Canola	cytosol	22.43	34.02
KXG19170	Sorghum	plastid	32.84	33.93
KXG34470	Sorghum	nucleus, plastid	30.98	33.88
CDY52362	Canola	nucleus	28.87	33.87
TraesCS7B01G437100.1	Wheat	plastid	33.83	33.83
AT5G62090.1	Thale cress	nucleus	34.2	33.82
TraesCS7A01G520700.1	Wheat	nucleus	33.58	33.58
Zm00001d045516_P006	Maize	nucleus, plastid	32.22	33.55
Os06t0126000-02	Rice	cytosol, nucleus	34.08	33.45
Zm00001d035990_P002	Maize	plastid	32.22	33.33
CDY54085	Canola	nucleus, plastid	28.75	32.91
Bra029289.1-P	Field mustard	nucleus	26.89	32.83
HORVU7Hr1G115870.4	Barley	plastid	32.34	32.42
Zm00001d018890_P006	Maize	nucleus, plastid	30.11	32.27
Bra010458.1-P	Field mustard	nucleus, plastid	23.92	32.01
TraesCS7D01G146100.2	Wheat	nucleus, plastid	33.33	31.95
TraesCS7A01G144600.3	Wheat	nucleus, plastid	33.58	31.7
AT4G25520.1	Thale cress	plastid	29.37	31.68
TraesCS7D01G510400.2	Wheat	nucleus	33.33	30.96
TraesCS7D01G050000.5	Wheat	nucleus, plastid	32.84	30.92
TraesCS7B01G047100.4	Wheat	plastid	32.59	30.9
Bra013897.1-P	Field mustard	nucleus	15.24	30.83
TraesCS4A01G441500.1	Wheat	nucleus, plastid	32.96	30.82
TraesCS7A01G054900.2	Wheat	nucleus, plastid	33.21	30.56
HORVU7Hr1G029650.10	Barley	plastid	32.59	30.09
HORVU7Hr1G010050.2	Barley	nucleus, plastid	32.59	30.06
GSMUA_Achr6P18610_001	Banana	plastid	28.0	25.8
GSMUA_Achr2P20700_001	Banana	plastid	26.77	25.2
GSMUA_Achr10P...	Banana	nucleus, plastid	27.14	24.91
GSMUA_Achr3P02850_001	Banana	nucleus	26.39	23.77
GSMUA_Achr5P25900_001	Banana	nucleus	22.06	18.54

Protein Annotations

EnsemblPlants:GSMUA_Achr2P03310_001	EnsemblPlants:GSMUA_Achr2T03310_001	EnsemblPlantsGene:GSMUA_Achr2G03310_001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12
PFAM:PF01803	SEG:seg	UniParc:UPI0002949B01	UniProt:M0S4S2	MapMan:35.1	:

Description

transcriptional corepressor SEUSS, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G03310_001]

Coordinates

chr2:+:8962115..8972748

Molecular Weight (calculated)

89666.0 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.431

Length

807 amino acids

Sequence
(BLAST)

001: MAYSRVTVGV GGPSLSSSAS GVFIQHDGGQ TPATVSSMSE KGYAGLRPAS GDMNQILNST GNSSGPSVGA SSFVTDANSA LSGGSSVMDG CSNVQQSPLQ
101: EQVQKQGLST ATSQLMQQEP SNLMNARKKP RLDIRHEDTL QQQLIQQLLQ RHEPVQPQDQ LNLRQQAISQ QQRLVYRQPQ QIMHSFSQMQ GAPITLQRQQ
201: QLQHQQQPTY PPANAAKQSL DNKICYRRLM QYLYHRRHRP PDNSVLYWKE FVAEYFAIQA KKRWCLSLYD NMGSHALGVF PQLAVNAWQC NICGSKSVKG
301: FEATFEVLPR LFQIKFDHGV FDENLFLDMP HERQLSSGIV ILEFKKAVQE SIYEHLRIVQ EGQLQIIFTP ELKILFWEFC ARQHEEFLPR RQLALQVDQL
401: LQVAQRYQAA VAESSSTEVS YQYLQSSCNL FAAVGHQLAR DLDLKSLNNL GFSKRYVRCL QISEVVNSMK DLIDFSQDQK IGPLESLKNY PRQVKQKWES
501: EQVMSAHSLP GDHRSMNKVM GNHPGLNSCI INNLAASQVV NSSQQSVHAL NNHQNFLKSS LNLKQNVRQQ EAFLSNTSGS KHADYVQFQG SATSIPTKTS
601: INNLSGQHQV PLPLDGCLSR QTNLQTLEVN QQLQQSVLQQ MLQEMIDDKG ASQQSLVASD VNANPTAEDI IGGGISGTSV RIDSGSTGNT LDLQNMCRNL
701: PNDDTLTVPS RNNSFKSSTA ANNPTSSGSN LIASLDMLGS MDLPEIDHIA QELMPNGMFD GESCTWGVFC GCCVFNGQDD AAMVLTNGGS FLVNSTWLLQ
801: FSFREFD

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.