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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G095100.1
TraesCS1A01G392300.1
TraesCS1B01G123100.1
TraesCS1B01G420500.1
TraesCS1D01G103800.1
TraesCS1D01G400500.1
TraesCS2A01G267400.1
TraesCS2A01G291900.1
TraesCS2A01G292000.1
TraesCS2B01G268200.1
TraesCS2B01G308400.1
TraesCS2B01G308500.1
TraesCS2D01G256400.1
TraesCS2D01G289900.2
TraesCS2D01G290000.1
TraesCS3A01G271400.1
TraesCS3B01G305100.1
TraesCS3D01G271000.1
TraesCS4A01G251800.1
TraesCS4A01G256700.1
TraesCS4A01G291900.1
TraesCS4A01G292000.1
TraesCS4A01G292100.1
TraesCS4A01G292200.1
TraesCS4B01G021900.2
TraesCS4B01G022000.1
TraesCS4B01G057900.1
TraesCS4D01G019600.1
TraesCS4D01G019800.1
TraesCS4D01G019900.1
TraesCS4D01G058000.1
TraesCS5A01G370200.1
TraesCS5A01G405900.1
TraesCS5B01G372500.1
TraesCS5B01G410600.1
TraesCS5D01G379700.1
TraesCS5D01G415900.1
TraesCS7A01G334800.1
TraesCS7B01G246300.1
TraesCS7D01G342300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62090.1 TraesCS1A01G095100.1 AT2G47700.1 21798944
AT5G62090.1 TraesCS1B01G123100.1 AT2G47700.1 21798944
AT5G62090.1 TraesCS1D01G103800.1 AT2G47700.1 21798944
AT5G62090.1 TraesCS2A01G291900.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2A01G292000.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2B01G308400.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2B01G308500.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS2D01G289900.2 AT3G44720.1 21798944
AT5G62090.1 TraesCS2D01G290000.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS5A01G370200.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS5B01G372500.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS5D01G379700.1 AT3G44720.1 21798944
AT5G62090.1 TraesCS1A01G392300.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS1B01G420500.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS1D01G400500.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS3A01G271400.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS3B01G305100.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS3D01G271000.1 AT3G58630.1 21798944
AT5G62090.1 TraesCS2A01G267400.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS2B01G268200.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS2D01G256400.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G251800.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G256700.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G291900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G292000.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G292100.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4A01G292200.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4B01G021900.2 AT4G08150.1 21798944
AT5G62090.1 TraesCS4B01G022000.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4B01G057900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G019600.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G019800.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G019900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS4D01G058000.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS5A01G405900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS5B01G410600.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS5D01G415900.1 AT4G08150.1 21798944
AT5G62090.1 TraesCS7A01G334800.1 AT5G53950.1 21798944
AT5G62090.1 TraesCS7B01G246300.1 AT5G53950.1 21798944
AT5G62090.1 TraesCS7D01G342300.1 AT5G53950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G050000.5 Wheat nucleus, plastid 93.61 95.8
TraesCS4A01G441500.1 Wheat nucleus, plastid 93.84 95.36
TraesCS7A01G144600.3 Wheat nucleus, plastid 92.59 94.97
TraesCS7B01G047100.4 Wheat plastid 87.8 90.48
HORVU7Hr1G010050.2 Barley nucleus, plastid 90.19 90.4
HORVU7Hr1G029650.10 Barley plastid 88.6 88.9
TraesCS7A01G520700.1 Wheat nucleus 69.56 75.59
Os06t0126000-02 Rice cytosol, nucleus 62.03 66.18
KXG19170 Sorghum plastid 53.71 60.31
KXG34470 Sorghum nucleus, plastid 50.4 59.89
Zm00001d045516_P006 Maize nucleus, plastid 52.22 59.1
Zm00001d035990_P002 Maize plastid 52.11 58.59
Zm00001d018890_P006 Maize nucleus, plastid 46.98 54.71
GSMUA_Achr7P05870_001 Banana nucleus 14.94 45.8
Solyc03g026190.2.1 Tomato plastid 27.25 42.38
GSMUA_Achr1P16220_001 Banana nucleus 32.84 41.2
KRG88471 Soybean nucleus, plastid 19.84 40.65
KRH38603 Soybean plastid 23.83 39.36
GSMUA_Achr1P07930_001 Banana nucleus 34.89 38.54
KRH38604 Soybean nucleus 34.09 37.01
GSMUA_Achr10P... Banana nucleus 32.16 36.39
CDX92713 Canola nucleus, plastid 28.28 36.1
CDY57709 Canola nucleus, plastid 19.84 35.37
CDX89417 Canola nucleus 15.51 35.32
CDY50201 Canola nucleus, plastid 27.02 34.75
Bra019159.1-P Field mustard nucleus, plastid 27.02 34.75
CDY54085 Canola nucleus, plastid 27.82 34.61
AT4G25515.1 Thale cress nucleus, plastid 27.02 34.6
CDY52362 Canola nucleus 27.14 34.59
VIT_16s0100g00500.t01 Wine grape plastid 33.75 34.26
KRH09132 Soybean plastid 33.87 33.79
KRH09131 Soybean nucleus, plastid 33.41 33.72
CDY30691 Canola nucleus 29.08 33.64
Bra010458.1-P Field mustard nucleus, plastid 22.92 33.33
GSMUA_Achr2P03310_001 Banana nucleus 30.56 33.21
AT4G25520.1 Thale cress plastid 28.05 32.89
VIT_02s0025g04390.t01 Wine grape vacuole 25.43 32.46
CDX92714 Canola cytosol 19.5 32.14
PGSC0003DMT400037024 Potato plastid 33.07 31.66
AT5G62090.1 Thale cress nucleus 29.42 31.62
Bra013897.1-P Field mustard nucleus 14.25 31.33
Bra029289.1-P Field mustard nucleus 22.23 29.5
TraesCS4A01G211800.1 Wheat nucleus, plastid 22.23 21.43
TraesCS4A01G211700.2 Wheat nucleus, plastid 22.12 20.79
Protein Annotations
EnsemblPlants:TraesCS7A01G054900.2EnsemblPlantsGene:TraesCS7A01G054900InterPro:LIM-bd/SEUSSncoils:CoilPANTHER:PTHR10378PANTHER:PTHR10378:SF12
PFAM:PF01803SEG:segMapMan:35.1:::
Description
No Description!
Coordinates
chr7A:-:26423813..26429152
Molecular Weight (calculated)
97302.7 Da
IEP (calculated)
8.990
GRAVY (calculated)
-0.839
Length
877 amino acids
Sequence
(BLAST)
001: MSGAPRSNLG LVPRDMNGSL PVSTTNSSGP SIGVSSLVTD GNSSLSGGAQ FQQSTSMNAD SFMRLPASPM SFSSNNISGS SVIDGSIMQQ SPPQEQMQKR
101: RACSVTSQPV IDAAAAFHAQ KKPRVDIRQD DILQQQLIQQ LLQGQSSLHL QGQHNPQLQA LIRQHKLAQI QQQQQHQLSQ QFPQHQHSQV GIPRQPQLRP
201: PPAQPGIELA GPVRTPVESG LCSRRLMQYL YHKRYRPDNN PITYWRKLID EYFAPRSRER WCVSSYEKPG NTSAAIPQTS PGTWRCDICN THSGKGYEAT
301: SEILPRLCQI RFDHGVKDEY LFLDMPNEFR LPNGLLLLEH TKVVQKSIYD HQHVTHEGQL RIIFTPELKI MSWEFCSRKH DEYVTRKFLT EQVTHMLRAT
401: QSYQATVTKN GPAGLSNDEA QKACNEFASA SRQLAKNIDH HSLNEHGLSK RYVRCLQISE VVNHMKDLIE FSHKNKLGPI EGLKNYPKQT AGPKLTVQNL
501: HDSKAVKTEM SPHVNNEVPG VGAISNNPQN PAAQSNYQHM LRSSSANQGL LQQEASQNAA AMNSYQNMFR SSSANQGLLQ QEASQNAAAL NNYQNMLRGS
601: SPNQSLLQQE ASSIFKGPTA VHSGIQLEAS RSFRASQLGQ FQHPMSFQQG MPQHQHNSFQ GLGASPQFQQ HVINQLLQEA KNTNSRALAH HHHQQQQQQH
701: HQQQQQHHQQ QQQQQQQQQP QQQQHQQPQQ QQHQQPQQQQ HQQPQQQQHQ QPQPQQQSPS TPNANGGLTS GAAVTNSAAS AEQAQHMNNG TAKGAAPMGM
801: TGPSNLINSG AGMVQRSSSF KSVSSNPAAS GGNAAATPKA ESVHDMDDLE HLISHELVES GLFMGEQPGD GGFSWNI
Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.