CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013897.1-P	Field mustard	nucleus	82.6	79.7
CDY57709	Canola	nucleus, plastid	54.81	42.89
CDX92713	Canola	nucleus, plastid	68.31	38.28
CDY52362	Canola	nucleus	67.27	37.65
CDY50201	Canola	nucleus, plastid	66.23	37.39
CDY54085	Canola	nucleus, plastid	67.27	36.74
KRG88471	Soybean	nucleus, plastid	34.55	31.07
CDX92714	Canola	cytosol	40.78	29.51
Solyc03g026190.2.1	Tomato	plastid	41.3	28.19
GSMUA_Achr7P05870_001	Banana	nucleus	19.22	25.87
KRH38603	Soybean	plastid	34.03	24.67
KRH09131	Soybean	nucleus, plastid	51.17	22.67
KRH38604	Soybean	nucleus	47.27	22.52
GSMUA_Achr1P16220_001	Banana	nucleus	40.0	22.03
VIT_16s0100g00500.t01	Wine grape	plastid	49.35	21.99
KRH09132	Soybean	plastid	48.83	21.39
CDY30691	Canola	nucleus	41.56	21.11
PGSC0003DMT400037024	Potato	plastid	47.53	19.98
KXG34470	Sorghum	nucleus, plastid	37.4	19.51
GSMUA_Achr10P...	Banana	nucleus	39.22	19.48
GSMUA_Achr1P07930_001	Banana	nucleus	40.0	19.4
Zm00001d018890_P006	Maize	nucleus, plastid	35.58	18.19
KXG19170	Sorghum	plastid	36.88	18.18
Zm00001d045516_P006	Maize	nucleus, plastid	36.1	17.94
TraesCS7A01G520700.1	Wheat	nucleus	37.4	17.84
TraesCS7B01G437100.1	Wheat	plastid	37.14	17.72
HORVU7Hr1G115870.4	Barley	plastid	36.88	17.64
Zm00001d035990_P002	Maize	plastid	35.58	17.56
Os06t0126000-02	Rice	cytosol, nucleus	37.4	17.52
CDY67669	Canola	mitochondrion, nucleus	10.39	16.81
TraesCS7D01G510400.2	Wheat	nucleus	37.66	16.69
GSMUA_Achr2P03310_001	Banana	nucleus	34.55	16.48
TraesCS7D01G146100.2	Wheat	nucleus, plastid	35.06	16.03
TraesCS7B01G047100.4	Wheat	plastid	35.06	15.86
TraesCS7A01G144600.3	Wheat	nucleus, plastid	35.06	15.79
TraesCS7D01G050000.5	Wheat	nucleus, plastid	35.06	15.75
TraesCS4A01G441500.1	Wheat	nucleus, plastid	35.06	15.64
HORVU7Hr1G010050.2	Barley	nucleus, plastid	35.32	15.54
TraesCS7A01G054900.2	Wheat	nucleus, plastid	35.32	15.51
HORVU7Hr1G029650.10	Barley	plastid	34.81	15.33
CDY70167	Canola	cytosol, mitochondrion, nucleus	10.65	14.44
CDY14963	Canola	nucleus, plastid	25.19	13.14
CDY40943	Canola	nucleus, plastid	25.45	12.66
CDY69476	Canola	nucleus	3.9	5.49

Protein Annotations

EnsemblPlants:CDX89417	EnsemblPlantsGene:GSBRNA2T00149658001	InterPro:LIM-bd/SEUSS	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803
ProteinID:CDX89417	ProteinID:CDX89417.1	SEG:seg	UniParc:UPI0004EDF608	MapMan:35.1	:

Description

BnaA01g14760D

Coordinates

chrLK031858:-:1486980..1489152

Molecular Weight (calculated)

42912.1 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.535

Length

385 amino acids

Sequence
(BLAST)

001: MNKPAVGSEA LNMERSGGIN NMLLPTSPVS FPSSNINIPG SLVLDGSASM HHLSQKAGQG SVPMGENNYS HIDKKPRLDV KQEDMSSQQQ QFLHQLIQRQ
101: DLAGRNPQLQ ALLQQQRLMQ QQQQQIFNPA TTAENFITYW KKFVAEYFSP RAKQRLSLSQ YENAGHHALG MFPQAAPILS LEFCARRHEE LLLRRLIAPQ
201: VNQLLQVAQK CQTTISESGV LGAERQLAKF MELQSLNDLG YPKRYIRTLQ ISEVGKSMKD LMNFTGDHKL GPIEELKRLL EQTAMVKLHI QRMQEMEQLG
301: NSGAMNGSSQ AQMALTSGTM NGLTGNYNNN SSNNQTVGRV PSRNNSFTAA SNNNLHLSKD VSVTELSHGF SDDCFFNNSD IYGSL

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.