Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G520700.1 | Wheat | nucleus | 89.99 | 96.9 |
| TraesCS7B01G437100.1 | Wheat | plastid | 89.41 | 96.28 |
| HORVU7Hr1G115870.4 | Barley | plastid | 76.87 | 82.98 |
| TraesCS7D01G146100.2 | Wheat | nucleus, plastid | 70.2 | 72.45 |
| TraesCS7D01G050000.5 | Wheat | nucleus, plastid | 69.85 | 70.83 |
| Os06t0126000-02 | Rice | cytosol, nucleus | 63.52 | 67.15 |
| KXG34470 | Sorghum | nucleus, plastid | 53.74 | 63.28 |
| KXG19170 | Sorghum | plastid | 55.93 | 62.23 |
| Zm00001d035990_P002 | Maize | plastid | 54.32 | 60.51 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 53.62 | 60.13 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 49.37 | 56.97 |
| GSMUA_Achr7P05870_001 | Banana | nucleus | 14.96 | 45.45 |
| KRG88471 | Soybean | nucleus, plastid | 22.09 | 44.86 |
| Solyc03g026190.2.1 | Tomato | plastid | 28.88 | 44.5 |
| GSMUA_Achr1P16220_001 | Banana | nucleus | 34.41 | 42.78 |
| KRH38603 | Soybean | plastid | 25.89 | 42.37 |
| GSMUA_Achr1P07930_001 | Banana | nucleus | 35.56 | 38.92 |
| KRH38604 | Soybean | nucleus | 35.67 | 38.37 |
| GSMUA_Achr10P... | Banana | nucleus | 33.6 | 37.68 |
| CDX89417 | Canola | nucleus | 16.69 | 37.66 |
| AT4G25515.1 | Thale cress | nucleus, plastid | 29.57 | 37.52 |
| CDY52362 | Canola | nucleus | 29.69 | 37.5 |
| CDX92713 | Canola | nucleus, plastid | 29.57 | 37.41 |
| CDY57709 | Canola | nucleus, plastid | 21.17 | 37.4 |
| CDY54085 | Canola | nucleus, plastid | 30.26 | 37.3 |
| VIT_16s0100g00500.t01 | Wine grape | plastid | 36.25 | 36.46 |
| CDY50201 | Canola | nucleus, plastid | 28.42 | 36.22 |
| Bra019159.1-P | Field mustard | nucleus, plastid | 28.42 | 36.22 |
| KRH09131 | Soybean | nucleus, plastid | 36.13 | 36.13 |
| CDY30691 | Canola | nucleus | 31.3 | 35.88 |
| KRH09132 | Soybean | plastid | 35.67 | 35.27 |
| AT4G25520.1 | Thale cress | plastid | 30.26 | 35.16 |
| AT5G62090.1 | Thale cress | nucleus | 32.45 | 34.56 |
| Bra010458.1-P | Field mustard | nucleus, plastid | 23.94 | 34.49 |
| VIT_02s0025g04390.t01 | Wine grape | vacuole | 26.93 | 34.06 |
| Bra013897.1-P | Field mustard | nucleus | 15.54 | 33.83 |
| PGSC0003DMT400037024 | Potato | plastid | 35.56 | 33.73 |
| CDX92714 | Canola | cytosol | 20.6 | 33.65 |
| GSMUA_Achr2P03310_001 | Banana | nucleus | 30.96 | 33.33 |
| Bra029289.1-P | Field mustard | nucleus | 24.4 | 32.07 |
| TraesCS4D01G101500.1 | Wheat | nucleus, plastid | 23.02 | 22.03 |
| TraesCS4D01G101700.1 | Wheat | nucleus, plastid | 23.36 | 21.69 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G510400.2 | EnsemblPlantsGene:TraesCS7D01G510400 | InterPro:LIM-bd/SEUSS | ncoils:Coil | PANTHER:PTHR10378 | PANTHER:PTHR10378:SF12 |
| PFAM:PF01803 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:-:613447359..613453491
Molecular Weight (calculated)
95551.3 Da
IEP (calculated)
8.025
GRAVY (calculated)
-0.606
Length
869 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVAPHFNLG LVPRDMNGGI PVSSANSSGP SIGVSSLVTD GNSSLSGGAQ FQHSTSMNAD SFMRLPSSPM SFSSNNISGS SVIDGSTMQQ SPPQEQMQKR
101: RSSSATSQPG IEADGAFHGQ KKPRVDIRQD DILQQHLIQQ LLQGQSSLHF QGQHNPQLQA LIRQQKLAHI QQLQQHQLSQ QFPQIQQSQV GIPRQPQLRP
201: PLAQPGMQLP GPVRTPVESG LCSRRLMQYL YHKRQRPENN PITYWRKLID EYFAPRARER WCVSSYEKRG NSPIAIPTAQ DTWRCDICNT HTGKGYGNPS
301: PWLLLEDECC FLMGLFCNNH QIQYSCSSCE NKATYEILPR LCQIRFDHGV VDEYLFLDVP NEFRLPNGLL LLEHTKVVQK SIYDHLHVTH EGQLRIIFTP
401: ELKIMSWEFC SRRHDEYITR RFLAPQVNHL LQIAQKYQAA ANESGPAGVS TNDAQAICNM FASASQQLAK NLDHHSLNEH GLSKRYVRCL QISEVVNNMK
501: DLIDFSHKNK LGPIESLKNY PRQNGPKLTM QNMHEAKGAN TEISTHGNNE APGVGTVSSS LQNAVAQNNY QSMLRSSSAN QGLLQQEASQ NAAALNNYQS
601: MLRSSSANQG LLQQEASQNA AALNNYQNML RSSSANQLQQ EASQNAAALN NYQTMLRSSS ANQSLLQHEA SSMFKGPTGM HNGVQLEVSR SFRAGQLGQF
701: QQHPMSFQQA MPQHQQNSFG AGASTQYQQH LIQQLLQEAK SSNSRVMAQQ QQQPPSVSGP VITNNPASGD QAHQMNNGAV KGAAPTGTTG PSNLINSGVG
801: IVQRCSSFKS VSSNPAAGVA ASGGNPASPK PAESMHEEDE LDHLISSELA ESGLFMGEQQ GGGAYSWNM
101: RSSSATSQPG IEADGAFHGQ KKPRVDIRQD DILQQHLIQQ LLQGQSSLHF QGQHNPQLQA LIRQQKLAHI QQLQQHQLSQ QFPQIQQSQV GIPRQPQLRP
201: PLAQPGMQLP GPVRTPVESG LCSRRLMQYL YHKRQRPENN PITYWRKLID EYFAPRARER WCVSSYEKRG NSPIAIPTAQ DTWRCDICNT HTGKGYGNPS
301: PWLLLEDECC FLMGLFCNNH QIQYSCSSCE NKATYEILPR LCQIRFDHGV VDEYLFLDVP NEFRLPNGLL LLEHTKVVQK SIYDHLHVTH EGQLRIIFTP
401: ELKIMSWEFC SRRHDEYITR RFLAPQVNHL LQIAQKYQAA ANESGPAGVS TNDAQAICNM FASASQQLAK NLDHHSLNEH GLSKRYVRCL QISEVVNNMK
501: DLIDFSHKNK LGPIESLKNY PRQNGPKLTM QNMHEAKGAN TEISTHGNNE APGVGTVSSS LQNAVAQNNY QSMLRSSSAN QGLLQQEASQ NAAALNNYQS
601: MLRSSSANQG LLQQEASQNA AALNNYQNML RSSSANQLQQ EASQNAAALN NYQTMLRSSS ANQSLLQHEA SSMFKGPTGM HNGVQLEVSR SFRAGQLGQF
701: QQHPMSFQQA MPQHQQNSFG AGASTQYQQH LIQQLLQEAK SSNSRVMAQQ QQQPPSVSGP VITNNPASGD QAHQMNNGAV KGAAPTGTTG PSNLINSGVG
801: IVQRCSSFKS VSSNPAAGVA ASGGNPASPK PAESMHEEDE LDHLISSELA ESGLFMGEQQ GGGAYSWNM
001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL
Arabidopsis Description
SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.