CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22042
KRH22283
KRH22725
KRH25168
KRH26232
KRH26581
KRH27047
KRH27280
KRH30513
KRH55187
KRH61471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	KRH22725	AT3G44720.1	21798944
AT5G62090.1	KRH25168	AT3G44720.1	21798944
AT5G62090.1	KRH26581	AT3G44720.1	21798944
AT5G62090.1	KRH30513	AT3G44720.1	21798944
AT5G62090.1	KRH22283	AT3G58630.1	21798944
AT5G62090.1	KRH27047	AT3G58630.1	21798944
AT5G62090.1	KRH61471	AT4G08150.1	21798944
AT5G62090.1	KRH22042	AT5G53950.1	21798944
AT5G62090.1	KRH26232	AT5G53950.1	21798944
AT5G62090.1	KRH27280	AT5G53950.1	21798944
AT5G62090.1	KRH55187	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88471	Soybean	nucleus, plastid	44.8	84.58
KRH09132	Soybean	plastid	91.83	84.41
KRH38603	Soybean	plastid	53.34	81.17
KRH09131	Soybean	nucleus, plastid	87.13	81.01
Solyc03g026190.2.1	Tomato	plastid	51.24	73.4
VIT_16s0100g00500.t01	Wine grape	plastid	70.3	65.74
PGSC0003DMT400037024	Potato	plastid	62.25	54.91
AT5G62090.1	Thale cress	nucleus	51.11	50.61
CDY50201	Canola	nucleus, plastid	41.71	49.41
Bra019159.1-P	Field mustard	nucleus, plastid	41.71	49.41
CDY52362	Canola	nucleus	41.71	48.98
AT4G25515.1	Thale cress	nucleus, plastid	41.46	48.91
CDY30691	Canola	nucleus	45.54	48.55
GSMUA_Achr1P16220_001	Banana	nucleus	41.83	48.35
CDX92713	Canola	nucleus, plastid	41.09	48.33
CDY54085	Canola	nucleus, plastid	41.83	47.94
GSMUA_Achr7P05870_001	Banana	nucleus	16.96	47.9
CDX89417	Canola	nucleus	22.52	47.27
CDY57709	Canola	nucleus, plastid	28.47	46.75
Bra029289.1-P	Field mustard	nucleus	36.76	44.93
GSMUA_Achr10P...	Banana	nucleus	42.82	44.65
AT4G25520.1	Thale cress	plastid	40.97	44.25
GSMUA_Achr1P07930_001	Banana	nucleus	42.95	43.7
Bra010458.1-P	Field mustard	nucleus, plastid	32.55	43.62
CDX92714	Canola	cytosol	27.85	42.29
Bra013897.1-P	Field mustard	nucleus	20.54	41.6
KXG19170	Sorghum	plastid	38.86	40.2
GSMUA_Achr2P03310_001	Banana	nucleus	39.85	39.9
Zm00001d035990_P002	Maize	plastid	37.99	39.36
Zm00001d045516_P006	Maize	nucleus, plastid	37.75	39.35
KXG34470	Sorghum	nucleus, plastid	35.4	38.75
Os06t0126000-02	Rice	cytosol, nucleus	39.36	38.69
TraesCS7B01G437100.1	Wheat	plastid	38.61	38.66
TraesCS7A01G520700.1	Wheat	nucleus	38.12	38.17
HORVU7Hr1G115870.4	Barley	plastid	36.51	36.65
Zm00001d018890_P006	Maize	nucleus, plastid	33.54	35.99
TraesCS7D01G510400.2	Wheat	nucleus	38.37	35.67
TraesCS7D01G146100.2	Wheat	nucleus, plastid	36.88	35.39
TraesCS7A01G144600.3	Wheat	nucleus, plastid	37.25	35.2
TraesCS7B01G047100.4	Wheat	plastid	36.63	34.78
TraesCS7D01G050000.5	Wheat	nucleus, plastid	36.88	34.77
TraesCS4A01G441500.1	Wheat	nucleus, plastid	36.88	34.53
HORVU7Hr1G010050.2	Barley	nucleus, plastid	37.38	34.51
TraesCS7A01G054900.2	Wheat	nucleus, plastid	37.01	34.09
HORVU7Hr1G029650.10	Barley	plastid	36.63	33.87
KRH18102	Soybean	plastid	32.8	28.56
KRH64564	Soybean	nucleus, plastid	31.56	27.99
KRH15928	Soybean	nucleus, plastid	31.19	27.54
KRH53367	Soybean	nucleus	31.44	26.43

Protein Annotations

EMBL:ACUP02005854	EnsemblPlants:KRH38604	EnsemblPlantsGene:GLYMA_09G146200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803	ProteinID:KRH38604
ProteinID:KRH38604.1	SEG:seg	UniParc:UPI0006EDEC99	UniProt:A0A0R0I8J3	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:-:36240687..36247439

Molecular Weight (calculated)

88719.5 Da

IEP (calculated)

9.572

GRAVY (calculated)

-0.635

Length

808 amino acids

Sequence
(BLAST)

001: MTPSRVAGGL TQSSSNSGIF YQGDGQSQNV VDSHLSSSFV NSSSTVPGAG RSNLGPVSGD INNAVLNTVA NSAPSVGASS LVTDANSSLS GGPHLQRSTS
101: VNTDSYLRLP ASPMSFTSNN ISISGSSVMD GSSVVQQSSH QDQNVQQLQQ NKQQPQGASS ATSLPASQTG PSTLQMGAQV PGSFIQDPNN MSHLSKKNRL
201: DTKQEDMTQQ QVIQQLLQRQ DSMQFQGRNP QLQAFLQQQQ QQQQRLRQQQ MFQQMPQLHR AHLQQQQQQQ QQMQLRQQQQ QQQQQQVMQP SSAVKRPYES
301: SVSGVCARRL MQYLYHQRQR PNDNSIAYWR KFVAEYYSLR AKKRWCLSLY SNVGHHALGV FPQASMDAWH CDICGSKSGR GFEATYEVLP RLNEIKFGSG
401: VIDELLFLDM PREMRFASGA MMLEYGKAVQ ESVYEQLRVV REGQLRIIFT QDLKILSWEF CARRHEELLP RRLVAPQVNQ LVQVAKKCQS TIAESGSDGA
501: SQQDIQTNSN MLLTAGGQLA KILEMQSLNE LGFSKRYVRC LQISEVVNSM KDLIDICAEH KIGAIESLKN YPRLATASKH QMQKMQEMEQ LGNVQCLPTD
601: QNTLNKLMAL NPGLNNHINN SHNMVNRGAL SGSAQAALAL NNYQNLLMRQ NSTNSSPGSL QREGSSFNNS NQSPSSALQG ASPALISGSM QNSSVSGFPS
701: PHLPPQQQQH HLQQRSLSSN ALLQQNHSHG SQGNQALQQQ QMIHQLLQEM SNNNGGMQPL SLGGPNAKNA MGFGGHTPSL SGGSANVPGN NGPMSRINSF
801: KTASNSDS

Best Arabidopsis Sequence Match ( AT5G62090.3 )
(BLAST)

001: MASSTSGIFF QGDDESQSFI NSHLTSSYGN SSNSAPGCGG PTGGYHNLSM VSGDMHNPVM MSVSTPGPSA GASSLVTDAN SGLSGGGPHL QRSASINNES
101: YMRLPASPMS FSSNNISISG SSVVDGSTVV QRHDPSVQLG GSSATSLPTS QTNQIPLSMA RRASESFFQD PNNLTQARKK PRLDSKQDDA LQQQILRQWL
201: QRQDILQQQQ QQQQQGQNPQ FQILLQQQKL RQQQQYLQSL PPLQRVQLQQ QQQVQQQQQL QQQHQQQQQQ LQQQGMQMQL TGGPRPYENS VCARRLMQYL
301: YHQRQRPSES SIVYWRKFVT EYFSPRAKKR WCLSHYDNVG HSALGVSPQA ATDEWQCDLC GSKSGRGFEA TFDVLPRLNE IKFASGVLDE LLYLGVPSER
401: RYGSGIMVLE YGKAVQESVY EHIRVVREGH LRIIFSQELK ILSWEFCTRR HEELLPRRLV APQVNQLLQV AEKCQSTIDQ SGSDGIHQQD LQANSNMVMA
501: AGRQLAKSLE SHSLNDLGFS KRYVRCLQIS EVVSSMKDMI DFCRDQKVGP IEALKSYPYR MKAGKPQMQE MEQLAAARGL PPDRNSLNKL MALRNSGINI
601: PMNNMSGQGS LPGSAQAAAF ALTNYQSMLM KQNHLNSDLN NTTIQQEPSR NRSASPSYQG TSPLLPGFVH SPSISGVSSH LSPQRQMPSS SYNGSTQQYH
701: QQPPSCSSGN QTLEQQMIHQ IWQQMANSNG GSGQQQQSLS GQNMMNCNTN MGRNRTDYVP AAAETPSTSN RFRGIKGLDQ SQNLEGIISN TSLNFGNNGV
801: FSNEVDESMG GYSWKS

Arabidopsis Description

SLK2Probable transcriptional regulator SLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.